PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066760001
Common NameGSBRNA2T00066760001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 268aa    MW: 31021.8 Da    PI: 9.0281
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066760001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-121764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++eEd++l+  +   G  +W+t++   g+ R +k+c++rw +yl
  GSBRNA2T00066760001 17 KGLWSPEEDQKLKSFILSQGHACWTTVPILAGLQRNGKSCRLRWINYL 64
                         678*******************************************97 PP
2Myb_DNA-binding54.72.3e-1770115148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg +++eE+e ++ ++  lG++ W++Ia++++ gRt++++k++w++yl
  GSBRNA2T00066760001  70 RGTFSAEEEETILTLHSSLGNK-WSRIAKYLP-GRTDNEIKNYWHSYL 115
                          899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.6331264IPR017930Myb domain
SuperFamilySSF466897.49E-2714111IPR009057Homeodomain-like
SMARTSM007172.0E-71666IPR001005SANT/Myb domain
PfamPF002493.1E-101764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-191871IPR009057Homeodomain-like
CDDcd001675.75E-62064No hitNo description
PROSITE profilePS5129426.6265119IPR017930Myb domain
SMARTSM007172.3E-1669117IPR001005SANT/Myb domain
PfamPF002494.3E-1670115IPR001005SANT/Myb domain
CDDcd001672.36E-1172115No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2572117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGKMTKSGER PKQRQRKGLW SPEEDQKLKS FILSQGHACW TTVPILAGLQ RNGKSCRLRW  60
INYLRPGLKR GTFSAEEEET ILTLHSSLGN KWSRIAKYLP GRTDNEIKNY WHSYLKKGCL  120
KSQPQLKTQR SNLTESSSSP VSCGKRNPET LDHVISFQTL PEKPYSPQSQ GSNKNMMKSN  180
NMPKLFFSEW ITSSDPHVHY SSEFTDSLHI NQTQNRSEDE ELVMIKNSYS SLEDDVMFRT  240
EFQQPHHEYA NYYTSEDFFI NSDVTYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23171177106B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066760001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009132543.10.0PREDICTED: transcription factor LAF1
SwissprotQ9M0K42e-92LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A078HK680.0A0A078HK68_BRANA; BnaA03g12690D protein
TrEMBLA0A397ZUS10.0A0A397ZUS1_BRACM; Uncharacterized protein
STRINGBra029129.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.11e-141myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]