PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066551001 | ||||||||
Common Name | GSBRNA2T00066551001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 285aa MW: 32075.9 Da PI: 5.392 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.3e-18 | 75 | 128 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k GSBRNA2T00066551001 75 KKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWK 128 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 129.7 | 1.2e-41 | 74 | 165 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE++Fe +kLepe K++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk+++dalk++ne L++++++L++e GSBRNA2T00066551001 74 EKKRRLNMEQVKTLEKTFELGNKLEPEMKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKQQFDALKADNELLQTHNQKLQAE 163 69**************************************************************************************99 PP HD-ZIP_I/II 91 lk 92 ++ GSBRNA2T00066551001 164 IM 165 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.34E-19 | 62 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.73 | 70 | 130 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-18 | 73 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.20E-16 | 75 | 131 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 75 | 128 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-19 | 82 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.2E-5 | 101 | 110 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 105 | 128 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.2E-5 | 110 | 126 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.7E-16 | 130 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSCNNGMSFF PSNFMIQTSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPIEVGNNMN 60 GEEDYSDDGS HMGEKKRRLN MEQVKTLEKT FELGNKLEPE MKMQLARALG LQPRQIAIWF 120 QNRRARWKTK QLEKDYDTLK QQFDALKADN ELLQTHNQKL QAEIMGLKNK EQIESINLNK 180 ETEGSCSNRS DNSSDNLRLD ISTALPSVDS TITAGHPPAP QTVGRHFFPP SPAVATTTTT 240 TMQFFQNSSS GQSMVKEENS ISNMLCAMDD HSGFWPWLDQ QQYN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 130 | RRARWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066551001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353311 | 0.0 | AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105645.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_013589953.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_013698957.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 | ||||
Refseq | XP_013728836.1 | 0.0 | homeobox-leucine zipper protein ATHB-13 | ||||
Swissprot | Q8LC03 | 0.0 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A078HN17 | 0.0 | A0A078HN17_BRANA; BnaA07g28310D protein | ||||
STRING | Bra016266.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo6g110380.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2633 | 27 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-167 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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