PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066422001
Common NameGSBRNA2T00066422001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 274aa    MW: 30698.7 Da    PI: 9.4995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066422001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21131180255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          g++GVr ++ +grW AeIrd    +  r r++lg+f+taeeAa+a++aa+ +l+g
  GSBRNA2T00066422001 131 GFRGVRKRP-WGRWSAEIRD----KiGRCRHWLGTFDTAEEAARAYDAAAMRLRG 180
                          79*******.**********....3335*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-14131180IPR001471AP2/ERF domain
PROSITE profilePS5103222.524131188IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-21131188IPR016177DNA-binding domain
SMARTSM003808.3E-32131194IPR001471AP2/ERF domain
PRINTSPR003673.5E-10132143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-28132188IPR001471AP2/ERF domain
CDDcd000184.15E-17132187No hitNo description
PRINTSPR003673.5E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MENTVDGHRL QLPYPQSFGV ETHQSLEMYG LHKETPLVCM PLSGAKTPFS DLTVTEPFNG  60
PDTFDISSLF SPDPKPVPVS QRRVMDDSIA AIVGENVLFG NNNIKVSEHF TATETGDGVK  120
RWRKTPQKNG GFRGVRKRPW GRWSAEIRDK IGRCRHWLGT FDTAEEAARA YDAAAMRLRG  180
TKAKTNFVVH PVFPEEIAET QSSTTEEDRR RKKKRVNVRK CVKVTSVEQL FSDTTRNLTS  240
SSNDGNVINP FNNLEKMGLE VDLKLGLGLF RNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-17123187671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214RRRKKKR
2209214RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066422001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0188484e-79AC018848.6 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence.
GenBankAC0188494e-79AC018849.2 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence.
GenBankAY5608444e-79AY560844.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g80580) mRNA, complete cds.
GenBankBT0260384e-79BT026038.1 Arabidopsis thaliana At1g80580 mRNA, complete cds.
GenBankCP0026844e-79CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4464464e-79DQ446446.1 Arabidopsis thaliana clone pENTR221-At1g80580 ethylene-responsive element-binding family protein (At1g80580) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553817.10.0ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M53e-80ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH50.0A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGBra008460.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-80ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]