PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066097001
Common NameGSBRNA2T00066097001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30332.3 Da    PI: 9.1266
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066097001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.11.1e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+ELSvLCd evavi+fs++gkl+e+ss
  GSBRNA2T00066097001  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDSEVAVIVFSKSGKLFEFSS 59
                         79***********************************************96 PP
2K-box81.42.1e-278417410100
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          + +++e+ ++e++ Lk+ei++Lq+++ +++G++L+ L lkeLq+LeqqL+ sl ++R++K+ ll++qiee++ +e++++ en++Lr++++
  GSBRNA2T00066097001  84 KPENQEEDCTEVDFLKNEISKLQEKHLQMQGKGLNALCLKELQHLEQQLNVSLISVRERKELLLTKQIEESRIREQRAELENETLRRQVQ 173
                          5578999*********************************************************************************98 PP

                K-box 100 e 100
                          e
  GSBRNA2T00066097001 174 E 174
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.791161IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002658.42E-43376No hitNo description
SuperFamilySSF554556.41E-31374IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.8E-1887172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.18688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD SEVAVIVFSK SGKLFEFSST  60
GMKRTLLRYE NYQRSSDAPL IKYKPENQEE DCTEVDFLKN EISKLQEKHL QMQGKGLNAL  120
CLKELQHLEQ QLNVSLISVR ERKELLLTKQ IEESRIREQR AELENETLRR QVQELRNFLP  180
SINQNYVPSY ITCFAIDPKN SPVNNSGLDD TNYSLQKTNS DTTLQLGLPG EAQARRRSEG  240
NRESPSSDSV TTSTTKATPQ RINLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A9e-23172172MEF2 CHIMERA
6byy_B9e-23172172MEF2 CHIMERA
6byy_C9e-23172172MEF2 CHIMERA
6byy_D9e-23172172MEF2 CHIMERA
6bz1_A8e-23172172MEF2 CHIMERA
6bz1_B8e-23172172MEF2 CHIMERA
6bz1_C8e-23172172MEF2 CHIMERA
6bz1_D8e-23172172MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21360.0flower| microspore-derived embryo| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066097001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU226810.0U22681.1 Brassica napus AGL15 type 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009121726.11e-170PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392951e-143AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A078JPV20.0A0A078JPV2_BRANA; BnaCnng56130D protein
STRINGBo9g166450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-121AGAMOUS-like 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]