PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066057001
Common NameGSBRNA2T00066057001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 532aa    MW: 60771.1 Da    PI: 7.7974
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066057001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.34.5e-21124224198
                          EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                          f kvlt sd++++g ++l kk a e+     +++++ s+ ++ +d++  +W++k+++r++++r+++t+GWk+F++ + L +gD+vvF + 
  GSBRNA2T00066057001 124 FTKVLTASDTSTHGGFSLFKKDAIEClplldMSQQAPSQWIVAKDLHDHVWKFKHTFRGTPQRHLFTSGWKQFARKKSLAVGDSVVFLR- 212
                          89*****************************667777889************************************************3. PP

                          SSSEE..EEEEE- CS
                   B3  86 grsefelvvkvfr 98 
                            +++e ++++++
  GSBRNA2T00066057001 213 -GENGESRIRIRK 224
                          .377777888876 PP
2Auxin_resp81.61.8e-27250329183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++a++tk++F+v+Y+P++  s+F+v+++kv +a+++k+  G+Rf m+fe+ d++e+ +sGt+v v+d  ++ W++S+Wr+L+
  GSBRNA2T00066057001 250 ASNAINTKCMFDVFYRPKS--SKFIVNCKKVIDAVNMKFNTGSRFTMKFEGHDFNEIIYSGTIVKVED-FSIYWKDSEWRNLQ 329
                          6799*************96..9**********************************************.567*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-29117246IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-35117239IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-20123224No hitNo description
PROSITE profilePS5086311.223124226IPR003340B3 DNA binding domain
PfamPF023623.0E-18124224IPR003340B3 DNA binding domain
SMARTSM010192.9E-17124226IPR003340B3 DNA binding domain
PfamPF065071.1E-25250329IPR010525Auxin response factor
PROSITE profilePS5174514.941452531IPR000270PB1 domain
SuperFamilySSF542771.24E-5452525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MENNKIRNAQ PKFQGTDETN RYMYNQLWKL CAGSLFDLPI IGEEVYYFPQ GHIEQAHLVA  60
SENDNLCQLK PIFDISSKIR CNVISIKLKV DTNTDEVYAK VSLSPCSPVI SIPNGNNEQN  120
INYFTKVLTA SDTSTHGGFS LFKKDAIECL PLLDMSQQAP SQWIVAKDLH DHVWKFKHTF  180
RGTPQRHLFT SGWKQFARKK SLAVGDSVVF LRGENGESRI RIRKAAPQQS NISSSVISEE  240
SMHHGLVATA SNAINTKCMF DVFYRPKSSK FIVNCKKVID AVNMKFNTGS RFTMKFEGHD  300
FNEIIYSGTI VKVEDFSIYW KDSEWRNLQV QWDEAATIPR PNKVSPWEIE PLIRKNKRQR  360
EINEIGLAMS KPDYNDQMAQ STKENSITNA SSSFRLFGVD LTASTKGRDV LEPLESYQKS  420
KISEIFDEEK LDQIQAVTSL TETQTKKIRF TTSSTKVHME GVVRTVDLTD FDGYNHMIVE  480
LEKLFNIEGK LHMHSQWKLT FKVHEGDMML VGDDSWLKFC NTVNEIFICS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1132335219355Auxin response factor 1
4ldw_A1e-1132335219355Auxin response factor 1
4ldw_B1e-1132335219355Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359KNKRQR
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066057001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794880.0JN979488.1 Brassica rapa subsp. pekinensis auxin response factor 27 (ARF27) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610137.10.0PREDICTED: auxin response factor 22-like
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLA0A078JLM80.0A0A078JLM8_BRANA; Auxin response factor
STRINGBo9g076090.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.10.0auxin response factor 22
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]