PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00066018001 | ||||||||
Common Name | GSBRNA2T00066018001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | SBP | ||||||||
Protein Properties | Length: 347aa MW: 38875.9 Da PI: 6.5029 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 123.3 | 1.1e-38 | 131 | 205 | 1 | 75 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 +Cq++gCe dls+ak+yhr+h+vC+ hsk+p+v+v gle+rfCqqCsr h++sefDe+krsCr+rL +hn+rrrk GSBRNA2T00066018001 131 RCQIDGCELDLSSAKDYHRKHRVCDNHSKCPKVTVGGLERRFCQQCSRLHAVSEFDEKKRSCRKRLTHHNARRRK 205 6*************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.2E-32 | 124 | 193 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.052 | 129 | 206 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.71E-36 | 130 | 206 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-29 | 132 | 205 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MDCNMASPTW DWDHLIMSNP SKTENDENQQ PSAEWEIEKG EGIESMLFPS TSTNSSSPKV 60 KQTNLASESS PGDSCSNVDS VQVKASTAAE SDLCLELGKQ TYSEEFWCRD NNDLQAVSMN 120 ARKKQSVQVP RCQIDGCELD LSSAKDYHRK HRVCDNHSKC PKVTVGGLER RFCQQCSRLH 180 AVSEFDEKKR SCRKRLTHHN ARRRKLPGMF PLNPERVCNP RQHTNMLWNE LSLNTESEET 240 FAWDTTYDTK PTQIESGFTL SFQRGHGRPD EQVVAGSSRS FSPYQTSGGF QLPSKGVGEY 300 SGGLNESQDF YSALSLLSTS SDSRGTKHNP MVESQPIHGT FPTHFM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-24 | 132 | 205 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 187 | 204 | KKRSCRKRLTHHNARRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.10418 | 0.0 | microspore-derived embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00066018001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009109814.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 10 isoform X2 | ||||
Swissprot | Q8S9L0 | 1e-166 | SPL10_ARATH; Squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A078JMM1 | 0.0 | A0A078JMM1_BRANA; BnaAnng25050D protein | ||||
STRING | Bra010949.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5004 | 16 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 1e-159 | squamosa promoter binding protein-like 10 |