PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00065932001 | ||||||||
Common Name | GSBRNA2T00065932001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 306aa MW: 35006.1 Da PI: 9.5683 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.8e-18 | 19 | 112 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkvl ++d +++ + +p +f+++++ k e s++++l+ ++g sW+++l +k+++ y+ ++GW +F ++ngL + + ++F+++g++ GSBRNA2T00065932001 19 FFKVLRKEDLSSQTMREIPQDFLKSISAK-EFSFKMVLKLPWGSSWRINL--SKYQSFfyYMEKDGWDQFLSDNGLGADELLTFTHKGNM 105 99*********************999755.799*****************..899888878888************************** PP EE..EEEEE CS B3 89 efelvvkvf 97 +f +v+++ GSBRNA2T00065932001 106 CF--NVSIY 112 **..66665 PP | |||||||
2 | B3 | 50.7 | 3.2e-16 | 219 | 296 | 4 | 87 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + ++s+vl +g +pk+f e h+ k e++ ++ d++g +sWev++ ++k ++ +++GW + vk+ gL+ gDf++F+l++ GSBRNA2T00065932001 219 TIKKSYVLFLG---VPKRFGEMHMPK--EETVFKIHDRKGkKSWEVTYVVSKIQS--RFSRGWPRLVKDFGLEIGDFCTFELIKP 296 55667777665...9*****999855..44589999*99989******5555555..599*********************9874 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 12 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-20 | 14 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.36E-18 | 17 | 112 | No hit | No description |
Pfam | PF02362 | 3.4E-15 | 19 | 111 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 19 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.985 | 19 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-18 | 213 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 213 | 305 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.15E-16 | 214 | 297 | No hit | No description |
SuperFamily | SSF101936 | 3.34E-19 | 214 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 2.1E-15 | 216 | 304 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 219 | 298 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MATNSCIGML MDESDNPGFF KVLRKEDLSS QTMREIPQDF LKSISAKEFS FKMVLKLPWG 60 SSWRINLSKY QSFFYYMEKD GWDQFLSDNG LGADELLTFT HKGNMCFNVS IYQINCLEML 120 RPNRSATIAS SSSRNKREEV SNGKEEERES LSASNYPVSE TAESTVGGRL KQKRQLINLG 180 KKQVKKAEKA NKCKKRKMDT ESDDSEDGTS SLAPEFTLTI KKSYVLFLGV PKRFGEMHMP 240 KEETVFKIHD RKGKKSWEVT YVVSKIQSRF SRGWPRLVKD FGLEIGDFCT FELIKPTEMI 300 LTVSK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.4990 | 0.0 | seed |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00517 | DAP | Transfer from AT5G18090 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00065932001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009121019.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g18090 | ||||
Swissprot | Q9FK61 | 1e-115 | Y5809_ARATH; B3 domain-containing protein At5g18090 | ||||
TrEMBL | A0A078HJ49 | 0.0 | A0A078HJ49_BRANA; BnaA10g16730D protein | ||||
STRING | Bra002132.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18090.1 | 1e-112 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|