PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065826001
Common NameGSBRNA2T00065826001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 259aa    MW: 29144.8 Da    PI: 5.7739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065826001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-20117168256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr ++ +g+++AeIrdp+ +g  +r++lg+f+ta eAa+a+++a+ +l+g+
  GSBRNA2T00065826001 117 HYRGVRMRP-WGKFAAEIRDPTRRG--TRVWLGTFDTAVEAARAYDQAAFRLRGA 168
                          7********.**********97665..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-32116176IPR001471AP2/ERF domain
PROSITE profilePS5103223.894117175IPR001471AP2/ERF domain
CDDcd000183.29E-29117175No hitNo description
SMARTSM003802.6E-35117181IPR001471AP2/ERF domain
PfamPF008471.2E-13117167IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22117177IPR016177DNA-binding domain
PRINTSPR003671.0E-10118129IPR001471AP2/ERF domain
PRINTSPR003671.0E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MATPSETSAL FFIKKHLLDE FSPLPNATTT NPWETSSDFS FFGSFDQTGF DFPEFETKPE  60
ITDTPLAPND SFTFQSNRKP PLKIAPPNRT EWIQFAAGNP QREQIPLPQV AAEEKRHYRG  120
VRMRPWGKFA AEIRDPTRRG TRVWLGTFDT AVEAARAYDQ AAFRLRGAKA IVNFPLEVGM  180
WEPRAENGQK NKRKRDGGEE ETRVVAKVVK TEESHGVEQV ASSLTGIDDW DLTEFLSMPL  240
FSPLSPHPPF GYPQLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-28116178466ATERF1
3gcc_A7e-28116178466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065826001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724013.11e-175ethylene-responsive transcription factor 6-like
RefseqXP_022550288.11e-175ethylene-responsive transcription factor 6-like
SwissprotQ8VZ911e-125EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A078HM070.0A0A078HM07_BRANA; BnaC01g10080D protein
STRINGBo1g017580.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-103ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]