PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065806001
Common NameGSBRNA2T00065806001, LOC106438092
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 304aa    MW: 33714.8 Da    PI: 9.3995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065806001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1102.7e-34592001128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+Ptd+e++ e+L+ kv+++       ++++  +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  GSBRNA2T00065806001  59 LPAGVKFDPTDQEVL-EHLEGKVRDDArklhplIDEFIrTIDGEnGICYTHPEKLP-GVNKDGTVRHFFHRPSKAYTTGTRKRRKVHtds 146
                          799**********99.99******9996665442222223554445**********.677788899******************743345 PP

                  NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                              + +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GSBRNA2T00065806001 147 evdgETRWHKTGKTRPVLT-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 200
                          5555788************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-3853219IPR003441NAC domain
PROSITE profilePS5100533.51459219IPR003441NAC domain
PfamPF023652.8E-1560200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWCNDRSDV QTVERIIPSP TAAESPAASF QVSSHKTCPS CGHKFKFHEQ AGIHDLPGLP  60
AGVKFDPTDQ EVLEHLEGKV RDDARKLHPL IDEFIRTIDG ENGICYTHPE KLPGVNKDGT  120
VRHFFHRPSK AYTTGTRKRR KVHTDSEVDG ETRWHKTGKT RPVLTGGRVR GYKKILVLYT  180
NYGKQKKPEK TNWVMHQYHL GTNEEEKEGE LVVSKVFYQT QPRQCGGSVA AAATAKERPY  240
LHGDSHHLGG GGGRHLHYHL HNVKGSGGSA GAGEYYNNIP AIISFNQTGI QNQLVNGSQP  300
FIP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065806001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3197710.0AF319771.1 Brassica napus CUC2-like protein gene, partial cds; and prohibitin 1-like protein and cruciferin subunit genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734604.10.0NAC domain-containing protein 73
SwissprotO494590.0NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A078HNI90.0A0A078HNI9_BRANA; BnaC01g09920D protein
STRINGBo1g017410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-179NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]