PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00065604001 | ||||||||
Common Name | GSBRNA2T00065604001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 386aa MW: 43531.7 Da PI: 6.0148 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29 | 2.4e-09 | 98 | 140 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k rr+++NReAAr+sR+RKka +++Lee +L++ ++L+ GSBRNA2T00065604001 98 DKMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELA 140 7999**************************8888887776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-8 | 88 | 141 | No hit | No description |
SMART | SM00338 | 0.0011 | 95 | 153 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.347 | 97 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.5E-6 | 99 | 141 | No hit | No description |
Pfam | PF07716 | 3.0E-5 | 99 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 102 | 117 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.0E-27 | 186 | 260 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MMSSSSSSTT QVVSLREMGM YEPFQQLSGW ENAFNTIGSS NQNNNNNNNN PSSSTVPEVD 60 ARADADDNNK ANYTSMYNNS VEAEPSSNND QDDDQINDKM KRRLAQNREA ARKSRLRKKA 120 HVQQLEESRL KLSQLEQELA RARQQGLCVR NSSDSSYLGP AGTMNTGIAA FEMEYTHWLE 180 EQNKRVSEIR TALQAHISDI ELKMLVDICL NNYANLFRMK ADAAKADVFF LISGMWRTST 240 ERFFQWIGGF RPSELLNVVM PYIEPLTDQQ LLEVRNLQQS SQQAEEALSQ GLDKLQQGLV 300 ENIAVDIRVV ESVSHGAQMA SAMENLQALE GFVNQADHLR KQTLQQMSKI LTTRQAARGL 360 LALGEYFHRL RALSSLWAAR PRERT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.15825 | 1e-175 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:8003690, ECO:0000269|PubMed:8628224}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters. {ECO:0000269|PubMed:12897257}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00157 | DAP | Transfer from AT1G22070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00065604001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU110098 | 0.0 | EU110098.1 Brassica juncea bZIP transcription factor (CdR15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467748.1 | 0.0 | PREDICTED: transcription factor TGA3 | ||||
Swissprot | Q39234 | 0.0 | TGA3_ARATH; Transcription factor TGA3 | ||||
TrEMBL | A0A078HN56 | 0.0 | A0A078HN56_BRANA; BnaC05g17700D protein | ||||
STRING | Bo5g035170.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3061 | 27 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22070.1 | 0.0 | TGA1A-related gene 3 |