PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00065417001

Common Name

GSBRNA2T00065417001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 405aa MW: 45008.1 Da PI: 4.972

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00065417001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.3	1.5e-18	312	362	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++++d+s+ +lpi++AA+ L +c+T++K iCR+ + RWP+Rk++sl GSBRNA2T00065417001 312 TRSLTVKDMSELWDLPIEEAARRLRICTTAVKNICRRGEVYRWPRRKLTSL 362 6789********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.016	302	383	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-16	314	362	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MAGGDPKPIA LQDNEDEDMF YDAYSEEYLM NLMSNPNPSL MHLPFRQNPL LAPPPAPALE 60 INKTALLGDP SVLNPHGDTI KEYLKSLRID DDSLTVDTSD TLSDDINDYI DYTDLGEIGS 120 DNVGESGILQ ANAHVFAENT MNFETGGTST IPVPVITPTP TISQGLFLCT YCNLLRQLVH 180 ANGQEMMRLD LFGGIGYFCH AVIESRRFDG SNELRYQMNL KMEDVKKFIE DYCAARAAGG 240 FVITQDTNAD FYQAMNACTT SSQLLMSTLP PRVDIPMSLA VPNESLNVTS VPPAVKGKPR 300 RQTNLSAQRK RTRSLTVKDM SELWDLPIEE AARRLRICTT AVKNICRRGE VYRWPRRKLT 360 SLREKVAALK IVVSQSTDAG VRARAEVKIE NFENQIDAIY SKAR*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MAGGDPKPIA LQDNEDEDMF YDAYSEEYLM NLMSNPNPSL MHLPFRQNPL LAPPPAPALE  60
INKTALLGDP SVLNPHGDTI KEYLKSLRID DDSLTVDTSD TLSDDINDYI DYTDLGEIGS  120
DNVGESGILQ ANAHVFAENT MNFETGGTST IPVPVITPTP TISQGLFLCT YCNLLRQLVH  180
ANGQEMMRLD LFGGIGYFCH AVIESRRFDG SNELRYQMNL KMEDVKKFIE DYCAARAAGG  240
FVITQDTNAD FYQAMNACTT SSQLLMSTLP PRVDIPMSLA VPNESLNVTS VPPAVKGKPR  300
RQTNLSAQRK RTRSLTVKDM SELWDLPIEE AARRLRICTT AVKNICRRGE VYRWPRRKLT  360
SLREKVAALK IVVSQSTDAG VRARAEVKIE NFENQIDAIY SKAR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.8036	0.0	flower\| microspore-derived embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00065417001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240087	0.0	AC240087.1 Brassica oleracea clone BOT01-44D22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619485.1	0.0	PREDICTED: uncharacterized protein LOC106325983
TrEMBL	A0A078HLD4	0.0	A0A078HLD4_BRANA; BnaC02g06390D protein
TrEMBL	A0A0D3AJA9	0.0	A0A0D3AJA9_BRAOL; Uncharacterized protein
STRING	Bo2g012920.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-08	RWP-RK domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]