PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00065179001

Common Name

GSBRNA2T00065179001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

CPP

Protein Properties

Length: 287aa MW: 31249.6 Da PI: 9.0085

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00065179001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47	5e-15	85	124	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ + GSBRNA2T00065179001 85 QKKKHCNCKHSRCLKLYCECFASGTYCDG-CNCINCFNNVD 124 589************************.******986 PP
2	TCR	52.4	1e-16	163	201	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k++kgCnCkks ClkkYCeCf+a+ Cse+CkC dCkN GSBRNA2T00065179001 163 KHNKGCNCKKSGCLKKYCECFQANILCSENCKCLDCKNF 201 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	5.2E-17	85	125	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	35.71	86	203	IPR005172	CRC domain
Pfam	PF03638	2.1E-11	87	122	IPR005172	CRC domain
SMART	SM01114	7.5E-19	163	204	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.1E-13	166	201	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MGNAGGGGKL PPKNDGGFGA PARDPARQLD EHSRPKPAPT VVTSSLHPVA MSQSQILNAP 60 IRLSRQESPQ SRPMPIVEGR DGTPQKKKHC NCKHSRCLKL YCECFASGTY CDGCNCINCF 120 NNVDNEPARR DAVEATLERN PNAFRPKIAH GVRDKREMVL LGKHNKGCNC KKSGCLKKYC 180 ECFQANILCS ENCKCLDCKN FDGSEERQAL FHGEHANNMA YLQQAGNAAI TGAVGFSGFA 240 PYPASKRRKG GQDISFSHAT KDTSSATGPS KFVYRCVSQV ILLIQRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	6e-33	78	212	2	132	Protein lin-54 homolog
5fd3_B	6e-33	78	212	2	132	Protein lin-54 homolog
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269\|PubMed:18057042}.

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00065179001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118658	1e-158	AK118658.1 Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20.
GenBank	BT005931	1e-158	BT005931.1 Arabidopsis thaliana At4g29000 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009137820.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	1e-135	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A078JJ46	0.0	A0A078JJ46_BRANA; BnaAnng24750D protein (Fragment)
STRING	Bra024171.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-137	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]