PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065160001
Common NameGSBRNA2T00065160001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 308aa    MW: 34896.2 Da    PI: 6.3143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065160001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.3e-5651311129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv++  +++ +++ +vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  GSBRNA2T00065160001   5 LPPGFRFHPTDEELITHYLCRKVSDIGFTA-KAVVDVDLNKCEPWDLPDKASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDK 93 
                          79*************************999.88***************988999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
  GSBRNA2T00065160001  94 EIYQ-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-653151IPR003441NAC domain
PROSITE profilePS5100560.2155151IPR003441NAC domain
PfamPF023655.1E-296130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDI GFTAKAVVDV DLNKCEPWDL PDKASMGEKE  60
WYFFSLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYQSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ENKQPFTPAK EEWVVCRVFE KSTAIKKPQE QQPQSSFGSP CDANSSMANE  180
FEDIELPNLN SNSSTFGYNH IHDHQYPQTS VYSEDNITSA AGLNMNMNMA TNIPSWTTSL  240
LAPPLSPINS LLLKAFQIRN SYSFPKEMVS NIHPSLHQQG ASSIMQNGSS SSQPQPQEEA  300
FNMDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-59415716171NO APICAL MERISTEM PROTEIN
3swm_A3e-59415719174NAC domain-containing protein 19
3swm_B3e-59415719174NAC domain-containing protein 19
3swm_C3e-59415719174NAC domain-containing protein 19
3swm_D3e-59415719174NAC domain-containing protein 19
3swp_A3e-59415719174NAC domain-containing protein 19
3swp_B3e-59415719174NAC domain-containing protein 19
3swp_C3e-59415719174NAC domain-containing protein 19
3swp_D3e-59415719174NAC domain-containing protein 19
4dul_A2e-59415716171NAC domain-containing protein 19
4dul_B2e-59415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00364DAPTransfer from AT3G18400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065160001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266581e-121AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026861e-121CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022576079.10.0NAC domain-containing protein 100
SwissprotQ9FLJ26e-81NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A078JJ370.0A0A078JJ37_BRANA; BnaCnng55590D protein
STRINGBra022319.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-180NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]