PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065147001
Common NameGSBRNA2T00065147001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 516aa    MW: 57682 Da    PI: 6.0643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065147001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-30266323259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK vkg+++prsYY+C+++gC +kk+ver+a+d +++ +tY g+H h 
  GSBRNA2T00065147001 266 NDGHRWRKYGQKIVKGNPNPRSYYKCSHKGCIMKKHVERAADDLRMLLVTYYGKHGHA 323
                          7******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-30251325IPR003657WRKY domain
SuperFamilySSF1182903.66E-26260325IPR003657WRKY domain
PROSITE profilePS5081131.364260325IPR003657WRKY domain
SMARTSM007744.2E-33265324IPR003657WRKY domain
PfamPF031063.5E-24266322IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSDYGDGNFM DMVSSRWAPP PSTSLSDNGL NPISDIFLQT NQSKQRPGLV DRVAARIGRN  60
IPPIRTDNLS PCAVVFKDPK TVPFGIEISP GLSPSVMLQS RSQLINPYSF PNDEPPETVE  120
NSGDDHAKTM IFNKDVPYQP MHFDLPPQEA LIPSHVDPIG APLVASFESE VADDTDTKLM  180
SLDDESESQD EEESNEDEDT DDPSKLGRKR RIDEEEDDDI ADEHEVKPSS PKRRKYDEVS  240
NMMTALRASN NPRVRLRMET EEAQPNDGHR WRKYGQKIVK GNPNPRSYYK CSHKGCIMKK  300
HVERAADDLR MLLVTYYGKH GHAAPLARSS SSSGPKNLYR SSVPARLGRP PFSSSSAAQD  360
MRSFPYPSAS APRDMKRFGY PSALAPQAMR PFPSSLNPGV DMTHLYKTGL SKLPSLPVNQ  420
NHGFMDQNAE PWVNQNHGFM GQNAEPQVNQ NHGFMAQNAE PWVNQNHGFM GQNAEPRVNQ  480
NHGFMSQNAE PRVNQNHGFM GQNTEPWSNQ NHGFMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-212663251877Probable WRKY transcription factor 4
2lex_A6e-212663251877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065147001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009147496.10.0PREDICTED: probable WRKY transcription factor 10
TrEMBLA0A078JJ320.0A0A078JJ32_BRANA; BnaAnng24700D protein (Fragment)
STRINGBra038006.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2037656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55600.14e-44WRKY DNA-binding protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]