PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065122001
Common NameGSBRNA2T00065122001, LOC106426023
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 167aa    MW: 18740.1 Da    PI: 9.7128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065122001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-2050100356
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          +kGVr+++ +g+++AeIrdp++ g  +r++lg++ taeeAa+a+++a+ kl+g+
  GSBRNA2T00065122001  50 FKGVRRRP-WGKYAAEIRDPNKHG--ARIWLGTYETAEEAAAAYDRAAFKLRGA 100
                          8*******.**********95544..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3449113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3149108IPR001471AP2/ERF domain
CDDcd000183.34E-1449109No hitNo description
PROSITE profilePS5103223.89449107IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2350108IPR016177DNA-binding domain
PRINTSPR003674.4E-105061IPR001471AP2/ERF domain
PfamPF008474.8E-145099IPR001471AP2/ERF domain
PRINTSPR003674.4E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MQQDLTSYDC SSVLDSIRRH LLEDDSESLS SFSSSSSPDL ESTRRRGGNF KGVRRRPWGK  60
YAAEIRDPNK HGARIWLGTY ETAEEAAAAY DRAAFKLRGA KAKLNFPHLI GIDGPEPSRI  120
TKRRLSTPVS CSPVARRRNT DIINLTARVP CLAFHYFYNI DSTTWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2846107263ATERF1
3gcc_A8e-2846107263ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Highly expressed in cell culture, especially during the exponential phase. {ECO:0000269|PubMed:11440157, ECO:0000269|PubMed:7756828}.
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065122001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722190.11e-121ethylene-responsive transcription factor 13
SwissprotQ404764e-37ERF1_TOBAC; Ethylene-responsive transcription factor 1
SwissprotQ8L9K12e-37ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078HJN11e-119A0A078HJN1_BRANA; BnaCnng09130D protein
TrEMBLA0A3P6GME31e-119A0A3P6GME3_BRAOL; Uncharacterized protein
STRINGBo8g118250.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-27ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]