PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064980001 | ||||||||
Common Name | GSBRNA2T00064980001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26487.2 Da PI: 6.5091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.7 | 3.2e-06 | 61 | 114 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++Er RR r+ ++ +L +llP s+ ++kK +i ++v YI +L GSBRNA2T00064980001 61 KKQERSANERLRRLRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPML 114 5778899**********************87888889**************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-9 | 55 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.62E-4 | 58 | 119 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-7 | 60 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.128 | 60 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0021 | 66 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDNHQTLAAS LLDDLLHIPA ETIGASGEKN DTCLAQSESK GKEVVVVLHD QDAHGPSSVA 60 KKQERSANER LRRLRLHASY LTLGTLLPDH SSSSKKKWCA PSIMDRVVTY IPMLHNEVEE 120 LTLRNQKLVE AVQSKRFREL ERQDPHIRAI SVLELEGSGD EVVVQISMKR VKADEFSNLL 180 HVMEMQGFCI LSASTSLVCR DQKVVCYNFH VKIDEKPSEG EDYITVLKNN IISTLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064980001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013594895.1 | 1e-172 | PREDICTED: uncharacterized protein LOC106303079 | ||||
Swissprot | F4I8F9 | 5e-89 | BH160_ARATH; Transcription factor bHLH160 | ||||
TrEMBL | A0A078HHT7 | 1e-174 | A0A078HHT7_BRANA; BnaC02g20610D protein | ||||
TrEMBL | A0A3P6D527 | 1e-174 | A0A3P6D527_BRAOL; Uncharacterized protein | ||||
STRING | Bo7g080650.1 | 1e-153 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10558 | 22 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71200.1 | 2e-91 | bHLH family protein |
Publications ? help Back to Top | |||
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