PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064783001
Common NameGSBRNA2T00064783001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 305aa    MW: 34134.8 Da    PI: 8.6587
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064783001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.76.2e-393392261
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                          +++lkcprC+s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvP+Ggg+rk kks
  GSBRNA2T00064783001 33 DQQTLKCPRCNSSNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGSLRNVPIGGGCRKTKKS 92
                         57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-342091IPR003851Zinc finger, Dof-type
PfamPF027014.7E-333591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.4783791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MSSHTNLHSP KPDHRITGAS HTKKPPSSTA SQDQQTLKCP RCNSSNTKFC YYNNYSLSQP  60
RHFCKSCRRY WTRGGSLRNV PIGGGCRKTK KSIKPNIIAP SSSSSQRFFS STMEEASKFF  120
TPPTAMDFQL AGLSLNKIND LQLMNNQEVL GLRTTMEQVE TTPVDVGSGL TLMGFGDYSS  180
NNNNHSPATF TTDGNLATSI ETLSCLNQDL HWRLQQQRMA MFFGNSKEET VVVERPQPLL  240
YRNLEIVNSS PSPTTKKGEN QTEWYFGNNN DNERVINNNE NNNTGGSDQW NNGLQAWTDV  300
NHYN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064783001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722389.10.0dof zinc finger protein DOF5.7-like
SwissprotQ9LSL61e-167DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBLA0A078HKJ40.0A0A078HKJ4_BRANA; BnaAnng04950D protein
TrEMBLA0A3P6BBL70.0A0A3P6BBL7_BRACM; Uncharacterized protein
STRINGBra031853.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49502850
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.11e-160Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Castorina G,Fox S,Tonelli C,Galbiati M,Conti L
    A novel role for STOMATAL CARPENTER 1 in stomata patterning.
    BMC Plant Biol., 2016. 16(1): p. 172
    [PMID:27484174]