PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064763001 | ||||||||
Common Name | GSBRNA2T00064763001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 25287.5 Da PI: 9.3242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 73 | 122 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 +r++h ++Er+RR+++N+ ++ L+ ++P + +s++ + a+i e +++Y+k+ GSBRNA2T00064763001 73 QRMNHIAVERNRRRQMNHFLSILKAMMPLS---YSRRSDQASIIEGTINYLKK 122 79****************************...******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-10 | 70 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.91E-13 | 70 | 128 | No hit | No description |
SuperFamily | SSF47459 | 9.03E-16 | 71 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.723 | 72 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-11 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-9 | 78 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MMSQQEYPYD FSLMKTSSIY EVLDYSIAEQ HSHPTENLSS LQAQGGFSQE PPRKKRKRRR 60 TRSEQKIEEK ENQRMNHIAV ERNRRRQMNH FLSILKAMMP LSYSRRSDQA SIIEGTINYL 120 KKQEQLLQSF EAQLKPTKPN QSINILSNFF NFPQYSTATA CASSRHHHNG LAVVANVEVT 180 MVEMHANIKV DEDCRLTTTA NEIADAVHEV VSRIHKEH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 52 | 57 | RKKRKR |
2 | 53 | 58 | KKRKRR |
3 | 53 | 59 | KKRKRRR |
4 | 54 | 59 | KRKRRR |
5 | 55 | 59 | RKRRR |
6 | 55 | 60 | RKRRRT |
7 | 73 | 84 | RMNHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064763001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018512187.1 | 1e-152 | PREDICTED: transcription factor bHLH99 | ||||
Swissprot | Q9FKQ6 | 1e-67 | BH099_ARATH; Transcription factor bHLH99 | ||||
TrEMBL | A0A078HHH7 | 1e-162 | A0A078HHH7_BRANA; BnaAnng04810D protein | ||||
STRING | Bra031865.1-P | 1e-159 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14959 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65320.1 | 3e-70 | bHLH family protein |
Publications ? help Back to Top | |||
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