PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064753001
Common NameGSBRNA2T00064753001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 371aa    MW: 42211.8 Da    PI: 8.068
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.79.4e-1284116335
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                          ++k +rr+++NReAAr+sR+RKka++++Le+  
  GSBRNA2T00064753001  84 PDKIQRRLAQNREAARKSRLRKKAYVQQLETSR 116
                          6899*************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-780126No hitNo description
SMARTSM003388.1E-882145IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.63484126IPR004827Basic-leucine zipper domain
PfamPF001704.1E-984114IPR004827Basic-leucine zipper domain
CDDcd147083.41E-2186137No hitNo description
SuperFamilySSF579592.39E-786120No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141443.6E-29172247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNSTSTHFVP PRRVGIYEPL HQFGMWGETF KHNIGNGGDM NTPSHIIIPN NQKLDNNNLS  60
EDTSQGTGGT PHMFDQEAST SKHPDKIQRR LAQNREAARK SRLRKKAYVQ QLETSRLKLI  120
HLEQELDRAR QQGFYVGNGI DTNSLSFSEP MNPGIAAFEM EYGHWIQEQN KQICELRTVL  180
QGQVSDVELR LLVENGMKHY FDLFRMKSAA AKADVFFVMS GMWRTSAERF FLWIGGFRPS  240
DLLKVLLPHF DVMTDQQILD VCNLRQSCQQ AEDALSQGME KLQHTLADCV AGGRLGEGSY  300
IPQVNSAMER LEALVSFVNQ ADHLRHETLQ QMHRILTTRQ AARGLLALGE YFQRLRALSS  360
SWATRHRELT *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.211260.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064753001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5320570.0FJ532057.1 Brassica rapa subsp. pekinensis TGA2 protein (TGA2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130499.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_009130500.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_009130501.10.0PREDICTED: transcription factor TGA1-like
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078HJF70.0A0A078HJF7_BRANA; BnaAnng04720D protein
TrEMBLA0A398AGT10.0A0A398AGT1_BRACM; Uncharacterized protein
STRINGBra031871.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]