PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00064592001 | ||||||||
Common Name | GSBRNA2T00064592001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 19264 Da PI: 10.5198 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 23 | 72 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrdp + + +r++lg+f taeeAa a+++a+ +++g+ GSBRNA2T00064592001 23 YRGVRQRP-WGKYAAEIRDP---N-KaARVWLGTFNTAEEAALAYDKAAFEFRGH 72 9*******.**********9...3.35*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.5E-14 | 22 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.71E-33 | 22 | 81 | No hit | No description |
SMART | SM00380 | 9.5E-37 | 22 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 22 | 80 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-33 | 22 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.723 | 22 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-11 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MTLIKWIIHI LKIKQRKSRQ RNYRGVRQRP WGKYAAEIRD PNKAARVWLG TFNTAEEAAL 60 AYDKAAFEFR GHKAKLNFPE HILINSSTHR YPSTATSHDP IIVTPVPPVA PDILLDQYGK 120 YLSENSYSST AILSMTISAS SSSLSQQENI PKLEDSESVK NMSIHKRRK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-27 | 18 | 87 | 1 | 69 | ATERF1 |
3gcc_A | 4e-27 | 18 | 87 | 1 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00064592001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189292 | 0.0 | AC189292.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026E08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009141338.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor ERF112-like | ||||
Refseq | XP_013747263.1 | 1e-111 | ethylene-responsive transcription factor ERF112-like | ||||
Swissprot | P93007 | 2e-59 | EF112_ARATH; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | A0A078HLG8 | 1e-122 | A0A078HLG8_BRANA; BnaA04g19700D protein | ||||
STRING | Bra021871.1-P | 1e-111 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 4e-47 | ERF family protein |
Publications ? help Back to Top | |||
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