PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064244001
Common NameGSBRNA2T00064244001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 275aa    MW: 30822.9 Da    PI: 9.7201
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064244001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-20131180255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          g++GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+ +l+g
  GSBRNA2T00064244001 131 GFRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAVRLRG 180
                          79*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.339131188IPR001471AP2/ERF domain
SMARTSM003805.5E-31131194IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-21131188IPR016177DNA-binding domain
PfamPF008479.8E-14131180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-28132188IPR001471AP2/ERF domain
PRINTSPR003673.5E-10132143IPR001471AP2/ERF domain
CDDcd000184.73E-17132187No hitNo description
PRINTSPR003673.5E-10154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MENTVDGHRL QLSYPQSFGV ETHQSLEMYG LHKETPLVCM PLSGAKTPFS NLTVTEPFNG  60
PDTFDISSLF SPDPKPVLVS QHRVMDDSIA AIVGENVLFG NNNIKVSEHF TATETGDGVK  120
RWRKTPQKNG GFRGVRKRPW GRWSAEIRDR IGRCRHWLGT FDTAEEAARA YDAAAVRLRG  180
TKAKTNFVVH PVFPEEIAET QLSTTEEDRR RKKKKRVNVR KCVKVTSVEQ LFSDTTRNLT  240
SSSNDGNVTN PFNNLEKMGL EVDLKLGLGL FRNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17123187671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215RRKKKKR
2210215RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064244001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128611.10.0PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M51e-80ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HK020.0A0A078HK02_BRANA; BnaA02g19610D protein
STRINGBra008460.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.12e-80ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]