PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00064161001
Common NameGSBRNA2T00064161001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 339aa    MW: 38500.3 Da    PI: 8.766
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00064161001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.1e-183279148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl
  GSBRNA2T00064161001 32 KGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 79
                         79********************************************97 PP

2Myb_DNA-binding54.62.5e-1785130148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  GSBRNA2T00064161001  85 RGKFTVQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 130
                          89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-262382IPR009057Homeodomain-like
PROSITE profilePS5129418.9042779IPR017930Myb domain
SuperFamilySSF466895.99E-3129126IPR009057Homeodomain-like
SMARTSM007171.7E-143181IPR001005SANT/Myb domain
PfamPF002496.6E-173279IPR001005SANT/Myb domain
CDDcd001672.82E-113479No hitNo description
PROSITE profilePS5129426.75380134IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2783135IPR009057Homeodomain-like
SMARTSM007172.6E-1784132IPR001005SANT/Myb domain
PfamPF002491.4E-1685130IPR001005SANT/Myb domain
CDDcd001671.56E-1187130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MPIHSQAKRA DFPSLWQIMG RSPCCDKDGL KKGPWTPEED QKLLAYIEEH GHGSWRSLPE  60
KAGLQRCGKS CRLRWTNYLR PDIKRGKFTV QEEQTIIQLH ALLGNRWSAI ATHLPKRTDN  120
EIKNYWNTHL KKRLVKMGID PVTHKHKNET LLSSTGQSKN LATLSHMAQW ESARLEAEAR  180
LARESKLLHV QHHRNNKPAA PDYCLAHKSS STNWTKPNQG NGDQQLESPT STSTVTFSEN  240
LPLMIMHLGI PTENRNSRVA VSSSIKDSDH DWMKQINCPK EGIEEGFTSL LLRDSVDRSL  300
SAGKNDESEY SYYEDNKNYW NSILSLVDSS PSDSPTMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-27301345108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.188268e-51leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00064161001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667330.0KC966733.1 Brassica napus MYB transcription factor 106 (MYB106.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640325.10.0transcription factor MYB106
SwissprotQ9LE630.0MY106_ARATH; Transcription factor MYB106
TrEMBLA0A078HI990.0A0A078HI99_BRANA; BnaA05g34070D protein
STRINGBra039142.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-152myb domain protein 106
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]