PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063377001
Common NameGSBRNA2T00063377001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 955aa    MW: 106979 Da    PI: 6.2882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063377001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS489.31.8e-149534371370
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v+sg+l++a+a+L++ls l+spdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf++++Pi
  GSBRNA2T00063377001  53 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQRKTNNVSEEVHVRRLFFDMFPI 142
                          689*************************************************************************************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+q ++sRpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn+
  GSBRNA2T00063377001 143 LKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQDFNSRPEGPPHLRITGVHH----HKEVLDQMAHILTEEAEKLDIPFQFNP 228
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhns 250
                           v+++le+l++++L vk+gEalaV++vlqlh++l                  ++s++l++  +++++L++++slsPk++vv+eq++dhn+
  GSBRNA2T00063377001 229 -VVSSLESLNIDQLGVKTGEALAVSSVLQLHNFLasdedilrkngyslsgdsASSLPLPNsgRISRFLNAMWSLSPKIMVVTEQDSDHNG 317
                          .799**********************************************997777777777999************************* PP

                 GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                          ++++er+le+l++y+alfd+leak+pr+ ++r+kvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ q ++l
  GSBRNA2T00063377001 318 STLMERLLESLYTYAALFDCLEAKVPRTCQDRSKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYFAMLQGRRL 407
                          ****************************************************************************************** PP

                 GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsv 370
                          l+ +++dgy+++eesg++v++W+drpL+s+
  GSBRNA2T00063377001 408 LQGYGFDGYMIKEESGCAVICWQDRPLYSM 437
                          ****************************86 PP
2GRAS502.51.7e-1535639511374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v+sg+l++a+a+L++ls l+spdgd+mqR+aayfteALa+r+++s+++lykal++++ +++n+see+++++lf++++Pi
  GSBRNA2T00063377001 563 LIHLLLTCANHVASGSLQNANAALEQLSLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQRKTNNVSEEVHVRRLFFDMFPI 652
                          689*************************************************************************************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk+s+l++N+aIlea+ege++vH+iD+d+s+++QW+aL+q ++sRpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn+
  GSBRNA2T00063377001 653 LKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALIQDFNSRPEGPPHLRITGVHH----HKEVLDQMAHILTEEAEKLDIPFQFNP 738
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll..................desvsles..erdevLklvkslsPkvvvvveqeadhns 250
                           v+++le+l++++L vk+gEalaV++vlqlh++l                  ++s++l++  +++++L++++slsPk++vv+eq++dhn+
  GSBRNA2T00063377001 739 -VVSSLESLNIDQLGVKTGEALAVSSVLQLHNFLasdedilrkngyslsgdsASSLPLPNsgRISRFLNAMWSLSPKIMVVTEQDSDHNG 827
                          .799**********************************************997777777777999************************* PP

                 GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                          ++++er+le+l++y+alfd+leak+pr+ ++r+kvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ q ++l
  GSBRNA2T00063377001 828 STLMERLLESLYTYAALFDCLEAKVPRTCQDRSKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYFAMLQGRRL 917
                          ****************************************************************************************** PP

                 GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          l+ +++dgy+++eesg++v++W+drpL+svSaWr
  GSBRNA2T00063377001 918 LQGYGFDGYMIKEESGCAVICWQDRPLYSVSAWR 951
                          *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.40727421IPR005202Transcription factor GRAS
PfamPF035146.2E-14753437IPR005202Transcription factor GRAS
PROSITE profilePS5098560.407537931IPR005202Transcription factor GRAS
PfamPF035145.8E-151563951IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MVVAMLQEDN GTSSVASSPL QVFSTMSLTR PALLSSPSSP FKDLKPEERG LYLIHLLLTC  60
ANHVASGSLQ NANAALEQLS LLSSPDGDTM QRVAAYFTEA LANRILKSWP GLYKALNATQ  120
RKTNNVSEEV HVRRLFFDMF PILKVSYLLT NRAILEAMEG EKMVHVIDLD ASEPAQWLAL  180
IQDFNSRPEG PPHLRITGVH HHKEVLDQMA HILTEEAEKL DIPFQFNPVV SSLESLNIDQ  240
LGVKTGEALA VSSVLQLHNF LASDEDILRK NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS  300
LSPKIMVVTE QDSDHNGSTL MERLLESLYT YAALFDCLEA KVPRTCQDRS KVEKMFFGEE  360
IKNIIACEGS ERRERHEKLE KWSQRIDLAG FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE  420
ESGCAVICWQ DRPLYSMVLG LCFVCLDVSF SESYFSKTAF YLKQKIFLNI KPSHFLLNSF  480
VFLVLSIDAK IKFSGSLKVF RILGLTFWPS MVVAMLQEDN GTSSVASSPL QVFSTMSLTR  540
PALLSSPSSP FKDLKPEERG LYLIHLLLTC ANHVASGSLQ NANAALEQLS LLSSPDGDTM  600
QRVAAYFTEA LANRILKSWP GLYKALNATQ RKTNNVSEEV HVRRLFFDMF PILKVSYLLT  660
NRAILEAMEG EKMVHVIDLD ASEPAQWLAL IQDFNSRPEG PPHLRITGVH HHKEVLDQMA  720
HILTEEAEKL DIPFQFNPVV SSLESLNIDQ LGVKTGEALA VSSVLQLHNF LASDEDILRK  780
NGYSLSGDSA SSLPLPNSGR ISRFLNAMWS LSPKIMVVTE QDSDHNGSTL MERLLESLYT  840
YAALFDCLEA KVPRTCQDRS KVEKMFFGEE IKNIIACEGS ERRERHEKLE KWSQRIDLAG  900
FGNVPLSYFA MLQGRRLLQG YGFDGYMIKE ESGCAVICWQ DRPLYSVSAW RCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-64369531380Protein SCARECROW
5b3h_D1e-64369531380Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063377001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588129.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_013588130.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A078HGZ10.0A0A078HGZ1_BRANA; BnaC06g03620D protein
STRINGBo6g022200.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]