PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063364001
Common NameGSBRNA2T00063364001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 340aa    MW: 39275.5 Da    PI: 7.5833
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063364001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.7e-125097154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGV ++  +g W A+I++      +kr++lg+f +a eAa  ++ a  kl+
  GSBRNA2T00063364001 50 TKYKGVVQHQ-NGHWGAQIYVD-----HKRIWLGTFKSAAEAAMSYDSASIKLR 97
                         69*****999.8*********3.....4*********************99998 PP
2B387.89.2e-28172263184
                          EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                          f+k+lt sdv+k++rlv+pkk+a ++        +g+  e+++++++d++ r+W+++++y+ +s+++vlt+GW +Fvk+++Lke+D+++F
  GSBRNA2T00063364001 172 FQKELTASDVGKLNRLVIPKKYAVKYlpfisereEGEIVEDVEVVFYDREMRQWKFRYCYWSSSQSFVLTRGWIGFVKEKRLKEKDVITF 261
                          99****************************99985566799************************************************* PP

                          EE CS
                   B3  83 kl 84 
                          + 
  GSBRNA2T00063364001 262 YT 263
                          93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.31E-2350110No hitNo description
SMARTSM003802.1E-1751114IPR001471AP2/ERF domain
PROSITE profilePS5103216.87151108IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-1451109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-1551108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-31165274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-27170264IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-26171262No hitNo description
PROSITE profilePS5086312.506172283IPR003340B3 DNA binding domain
SMARTSM010191.3E-18172275IPR003340B3 DNA binding domain
PfamPF023626.7E-25172263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MFLVSSAIPM DVAKSETLNT NDSYLPVKKR MRLNEPPTTD KALVSASDNT KYKGVVQHQN  60
GHWGAQIYVD HKRIWLGTFK SAAEAAMSYD SASIKLRTFD ANSQRNFPWS DLTVHEPVFQ  120
KGYTTEAVLN MIKDGSYQRE FKEFLKNRSQ IVSKQNRRDE ESNKQFSCTQ LFQKELTASD  180
VGKLNRLVIP KKYAVKYLPF ISEREEGEIV EDVEVVFYDR EMRQWKFRYC YWSSSQSFVL  240
TRGWIGFVKE KRLKEKDVIT FYTCDVPTLE GQSKKFLMID VHYFSDNDSA VTDEEVNKTV  300
HNSFDDVMKP EINSKLGGEE EAKPEEIKGG FMLFGVRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2417126113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063364001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013701468.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-156RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A078HFG30.0A0A078HFG3_BRANA; BnaC06g03690D protein
TrEMBLA0A0D3CPS40.0A0A0D3CPS4_BRAOL; Uncharacterized protein
STRINGBo6g022280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-149RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]