PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063338001
Common NameGSBRNA2T00063338001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 209aa    MW: 22716.4 Da    PI: 10.0115
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063338001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-192676155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a +Aa+a++aa+++l+g
  GSBRNA2T00063338001 26 TRFRGVRKRP-WGRYAAEIRDpWK----KARVWLGTFDSAVDAARAYDAAARNLRG 76
                         589*******.**********883....5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.2E-122676IPR001471AP2/ERF domain
CDDcd000184.30E-182685No hitNo description
SuperFamilySSF541712.09E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.4842784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-302784IPR001471AP2/ERF domain
SMARTSM003802.4E-362790IPR001471AP2/ERF domain
PRINTSPR003672.6E-92839IPR001471AP2/ERF domain
PRINTSPR003672.6E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRRGRVSIPV AGPTVTANHN ASIKETRFRG VRKRPWGRYA AEIRDPWKKA RVWLGTFDSA  60
VDAARAYDAA ARNLRGPKAK TNFPIESSPS PPQIDPFMDH RLYAGVSSRP TSSGMSSTVE  120
SSSGQRSSVA KPMSTTAKRY PRTPPVVPED CHSDCGSSSS VVDDGDDDIA SSSRRRNPPP  180
FKFDLNFPPL DDVGLINGVD DLCTDLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-201186474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063338001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589873.11e-150PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803396e-76ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A078HJT81e-148A0A078HJT8_BRANA; BnaC06g03860D protein
TrEMBLA0A0D3CPT71e-148A0A0D3CPT7_BRAOL; Uncharacterized protein
STRINGBo6g022410.11e-149(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.12e-60ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]