PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063330001
Common NameGSBRNA2T00063330001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family RAV
Protein Properties Length: 334aa    MW: 38063.1 Da    PI: 8.2486
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063330001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.55.2e-114591254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         +ykGV + + +g W A+I+       +kr++lg+f +a eAa+a++ a  k++
  GSBRNA2T00063330001 45 KYKGVVQQP-TGHWGAQIYAD-----HKRIWLGTFRSAAEAAAAYDSASIKIR 91
                         8********.9******9993.....4*******************9988876 PP
2B388.94.2e-28171266184
                          EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                          f k+ltpsdv+k++rlv+pkk+a ++            +g+  e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk++ Lke+D
  GSBRNA2T00063330001 171 FRKELTPSDVGKLNRLVIPKKYAVRYlpllrddrkergEGEIGEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKSLKEKD 260
                          89*****************************99888886666799********************************************* PP

                          EEEEEE CS
                   B3  79 fvvFkl 84 
                          ++vF+ 
  GSBRNA2T00063330001 261 VIVFYT 266
                          ****93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.22745102IPR001471AP2/ERF domain
SMARTSM003808.2E-1745108IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1345103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-1645102IPR001471AP2/ERF domain
PRINTSPR003674.1E-54657IPR001471AP2/ERF domain
PRINTSPR003674.1E-56682IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.105.8E-33164290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-28169267IPR015300DNA-binding pseudobarrel domain
CDDcd100171.73E-25170265No hitNo description
SMARTSM010192.2E-20171285IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435171288IPR003340B3 DNA binding domain
PfamPF023622.2E-25171266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNTEDAKTET PTVSSGCFLP LKKRVKLLNN PPNSALEVVV SGDAKYKGVV QQPTGHWGAQ  60
IYADHKRIWL GTFRSAAEAA AAYDSASIKI RSYDANMHRN FPWSEYTVHE PAFQNEHTTE  120
DVLSMIKDGT YQRKYREFFK KVQSKIVGGY NMVGSKEDQE SKKCFSCTEL FRKELTPSDV  180
GKLNRLVIPK KYAVRYLPLL RDDRKERGEG EIGEDVEVVF YDRAMRQWKF RYCYWKSSQS  240
FVFTRGWNGF VKEKSLKEKD VIVFYTCDVP TLEGQSKKFL MIDVQCSSDE GSAVCDEEVN  300
ETVHNSSEGG VKTEETKSVE NKGGFMLFGV RIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2317026413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063330001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591041.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_022560996.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-155RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A078HID10.0A0A078HID1_BRANA; BnaC06g03900D protein
STRINGBo6g022450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-139RAV family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]