PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00063253001 | ||||||||
Common Name | GSBRNA2T00063253001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 438aa MW: 49126.1 Da PI: 9.6254 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.5 | 5.5e-24 | 97 | 141 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep rCrRtDGKkWRCs++vl +k+CErH+hrgr+rsrk +e+ GSBRNA2T00063253001 97 DPEPTRCRRTDGKKWRCSNKVLLFQKYCERHMHRGRKRSRKLVES 141 79***************************************9986 PP | |||||||
2 | WRC | 70.2 | 2.6e-22 | 318 | 362 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs++vl+g+k+C+rH+hrg+ ++++++e+ GSBRNA2T00063253001 318 DSEPGRCRRTDGKKWRCSKDVLSGQKYCDRHMHRGSIKKKHPVET 362 689********************************9999999886 PP | |||||||
3 | QLQ | 43.1 | 1.3e-15 | 32 | 66 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 + aaQlq++++Q+l+y+y+ a++ vP +L+++i++ GSBRNA2T00063253001 32 MKAAQLQEFRMQALVYRYIEAGVRVPNHLVVPIWN 66 679*******************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-7 | 30 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 16.004 | 31 | 66 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.2E-9 | 34 | 65 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.312 | 97 | 141 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.6E-20 | 98 | 140 | IPR014977 | WRC domain |
PROSITE profile | PS51667 | 21.934 | 318 | 363 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-18 | 320 | 360 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MEEKKHSLQS NKMQSPKTEE EDEWRRKKWP CMKAAQLQEF RMQALVYRYI EAGVRVPNHL 60 VVPIWNSLAL SSSSSSGYLI HHNYPSSSNA VLNDKVDPEP TRCRRTDGKK WRCSNKVLLF 120 QKYCERHMHR GRKRSRKLVE SSSSYDVASS FASTKRDNTD GLNSSTESHS VSHGAMSVSS 180 NAQVVTIASL PSARVCDNIP RPSLVVTEST NKSVRRRITD MSYDDFIKQR GATTCVRGFP 240 VQGSERLPSV QKFFPEASDN TSEAARISSN RKNEIIARSR EWKNMNVNCG GLFPGIHFSP 300 DTVLQDRGGF GLHRVETDSE PGRCRRTDGK KWRCSKDVLS GQKYCDRHMH RGSIKKKHPV 360 ETTHTHENTV KTAARSVTCQ DGDGQKLPVS VLGREQLSRV SDEKNTNSCS TDTTITDIAL 420 KGEEDNEEVL SLCSSGV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 137 | GRKRSRKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the shoot apical meristem (SAM) and in young leaf primordium. {ECO:0000269|PubMed:15960617, ECO:0000269|PubMed:21036927}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:21036927}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00063253001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142342.1 | 0.0 | PREDICTED: growth-regulating factor 9 | ||||
Swissprot | Q8S9M3 | 1e-179 | GRF9_ARATH; Growth-regulating factor 9 | ||||
TrEMBL | A0A078HI77 | 0.0 | A0A078HI77_BRANA; BnaA04g26220D protein | ||||
TrEMBL | A0A397ZQ71 | 0.0 | A0A397ZQ71_BRACM; Uncharacterized protein | ||||
STRING | Bra039334.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13760 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45480.1 | 1e-179 | growth-regulating factor 9 |
Publications ? help Back to Top | |||
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