PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00063218001
Common NameGSBRNA2T00063218001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 322aa    MW: 34811 Da    PI: 8.4228
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00063218001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-18155209256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++keq  +Le+ F+++++++ +++  LAk+l+L +rqV vWFqNrRa+ k
  GSBRNA2T00063218001 155 RKKLRLSKEQALVLEDTFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTK 209
                          778899***********************************************98 PP
2HD-ZIP_I/II123.69.4e-40155244191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlskeq+ +LE++F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+kev+eLr +
  GSBRNA2T00063218001 155 RKKLRLSKEQALVLEDTFKEHSTLNPKQKLALAKQLNLRTRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLTEENRRLHKEVAELR-A 243
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00063218001 244 L 244
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-291117IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.2E-18134209IPR009057Homeodomain-like
SuperFamilySSF466891.41E-18141212IPR009057Homeodomain-like
PROSITE profilePS5007116.908151211IPR001356Homeobox domain
SMARTSM003891.8E-15153215IPR001356Homeobox domain
PfamPF000461.2E-15155209IPR001356Homeobox domain
CDDcd000867.69E-15155212No hitNo description
PROSITE patternPS000270186209IPR017970Homeobox, conserved site
PfamPF021831.5E-11211245IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-26211254IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGESEDGLGL SLSLGLSQLK EPSLGLGLNL LPLRTSSSSF SHMHNHNNNH LQKKINHNSW  60
PHQFHSSERN SDVGSLLRGL EVNRTPSATV VINLEEDLAG VSSPNSNISS VSGNKRDLAA  120
ARGDGGGDEN EAERASCSHG GGSDEEEGGN CEGTRKKLRL SKEQALVLED TFKEHSTLNP  180
KQKLALAKQL NLRTRQVEVW FQNRRARTKL KQTEVDCEYL KRCCDTLTEE NRRLHKEVAE  240
LRALKLSPHL YMHMTPPTTL TMCPSCERVS ASSSSSAMAA AAPPSSITSG GGGRIPTVVG  300
RPSPQRPTPC AAISLQSRLA H*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159TRKKLRL
2203211RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00063218001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By transition from light to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935891e-124AB493589.1 Arabidopsis thaliana At2g44910 mRNA for hypothetical protein, partial cds, clone: RAAt2g44910.
GenBankAJ4412511e-124AJ441251.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein ATHB4 (Athb4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142306.10.0PREDICTED: homeobox-leucine zipper protein ATHB-4-like
SwissprotP929531e-137ATHB4_ARATH; Homeobox-leucine zipper protein ATHB-4
TrEMBLA0A078HF660.0A0A078HF66_BRANA; BnaA04g25930D protein
TrEMBLM4FGV70.0M4FGV7_BRARP; Uncharacterized protein
STRINGBra040335.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.11e-78homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Gallemí M, et al.
    A non-DNA-binding activity for the ATHB4 transcription factor in the control of vegetation proximity.
    New Phytol., 2017. 216(3): p. 798-813
    [PMID:28805249]