PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00062739001 | ||||||||
Common Name | GSBRNA2T00062739001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 306aa MW: 34138.2 Da PI: 4.75 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 71 | 124 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k GSBRNA2T00062739001 71 KKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 124 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 131.2 | 4.1e-42 | 70 | 162 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrls eqvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk+++d+lk+++++L++++++L++e GSBRNA2T00062739001 70 EKKRRLSVEQVKALEKNFEIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNFDSLKRSRDSLQRDNDSLHAE 159 69**************************************************************************************** PP HD-ZIP_I/II 91 lke 93 +k+ GSBRNA2T00062739001 160 IKQ 162 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.77E-20 | 62 | 128 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.799 | 66 | 126 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 69 | 130 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.12E-18 | 71 | 127 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 71 | 124 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-20 | 73 | 133 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.5E-6 | 97 | 106 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 101 | 124 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.5E-6 | 106 | 122 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-17 | 126 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MKRLRGSSDS LSRFLPICHS ATDNQLSPGP TATGFLYSGT GDYSPMFDCL EDGSLEDIAV 60 GHASSTAATE KKRRLSVEQV KALEKNFEID NKLEPERKVK LAQELGLQPR QVAIWFQNRR 120 ARWKTKQLER DYGVLKSNFD SLKRSRDSLQ RDNDSLHAEI KQLRAKLNVD GISRSSSNAS 180 TEENVLVKAD ETVMPSNKVL ELNQRPLPPP PHIPTATEAP ALELEYEMLS IFPRAEIFRE 240 DPADSSDSSA ILNEEYSPTA AEAAAAVEMS TMGCFGQFVK MEEHEDLFSG EEACKLFADN 300 EQWYC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKTKQ |
2 | 139 | 144 | DSLKRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.21333 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Localized primarily to the hypocotyl of germinating seedlings. {ECO:0000269|PubMed:12678559}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a positive regulator of ABA-responsiveness, mediating the inhibitory effect of ABA on growth during seedling establishment. Binds to the DNA sequence 5'-CAATNATTG-3'. {ECO:0000269|PubMed:12678559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00062739001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:12678559, ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353247 | 1e-149 | AK353247.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-23-D07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009150623.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-5-like | ||||
Swissprot | P46667 | 1e-154 | ATHB5_ARATH; Homeobox-leucine zipper protein ATHB-5 | ||||
TrEMBL | A0A078JPP1 | 0.0 | A0A078JPP1_BRANA; BnaA06g39210D protein | ||||
STRING | Bra024377.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12986 | 15 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65310.1 | 1e-145 | homeobox protein 5 |
Publications ? help Back to Top | |||
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