PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00062653001 | ||||||||
Common Name | GSBRNA2T00062653001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HSF | ||||||||
Protein Properties | Length: 134aa MW: 15247.9 Da PI: 10.8617 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 40.9 | 5.5e-13 | 5 | 96 | 2 | 96 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHH...HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpk...yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 F +ly+i++d++ + +isws ++ n fvv+d +++ +++L k + +n++ F+ +L gF++v + ++ eF+h+ F++g GSBRNA2T00062653001 5 FYIQLYKIVDDRSSDPIISWSkSSPNVFVVWDLKKLRRDILMKssgVLLGRNITEFIAKLRSHGFRSVLKGFGE-------LEFEHDGFTRG 89 899******************6666****************886668899**********************99.......*********99 PP XXXXXXX CS HSF_DNA-bind 90 kkellek 96 ++ +k GSBRNA2T00062653001 90 LVTKKTK 96 7655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.6E-9 | 1 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.9E-11 | 3 | 89 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.9E-13 | 3 | 89 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 8.5E-6 | 5 | 28 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.0E-10 | 5 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.5E-6 | 60 | 72 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MLSSFYIQLY KIVDDRSSDP IISWSKSSPN VFVVWDLKKL RRDILMKSSG VLLGRNITEF 60 IAKLRSHGFR SVLKGFGELE FEHDGFTRGL VTKKTKMVKA LSERFDAQIK AIKCRFKAKK 120 SSSSLKVDIN LFP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00062653001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013745663.1 | 1e-82 | heat stress transcription factor A-4a-like | ||||
TrEMBL | A0A078HEM5 | 2e-90 | A0A078HEM5_BRANA; BnaC04g32080D protein | ||||
STRING | Bra025611.1-P | 6e-76 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 9e-13 | Winged helix-turn-helix transcription repressor DNA-binding |
Publications ? help Back to Top | |||
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