PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061310001
Common NameGSBRNA2T00061310001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 382aa    MW: 40544.2 Da    PI: 6.3245
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061310001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1673.2e-21274336163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrk++NRe+ArrsR+RK+ae++eL++++++L +eN +L+ e+++l+ ++++l +e+
  GSBRNA2T00061310001 274 ERELKRQRRKESNRESARRSRLRKQAECDELAQRADVLNGENASLRAEINKLRSQYEELVAEN 336
                          89********************************************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.2E-31197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.3E-33136252No hitNo description
Gene3DG3DSA:1.20.5.1709.0E-18266332No hitNo description
PfamPF001701.3E-19274336IPR004827Basic-leucine zipper domain
SMARTSM003384.5E-21274338IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.909276339IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11277333No hitNo description
CDDcd147023.20E-23279329No hitNo description
PROSITE patternPS000360281296IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGSSEVDKSG EENEPKTPSS SSAPVTSQEP SSAVATPDWS GFQAYSPMPP HGYVASSPQP  60
HPYMWGVQHM MPPYGTPPHP YVAMYPPGGM YAHPSIPPGS YPYSPYAMPS PNGMAEASGN  120
TGSGVEGDGK QAEVKEKLPI KRSKGSLGSL NMIIGKKNEA GKNSGASANG ACSKRHSGSD  180
GSSEGSDANS QNDSGSRHNG KDGETASDSA QGPPRNGSNQ PVNQIVPVTP VSATGVPAPP  240
TNLNMGMDYW SGHGTTVPGV VVDGSQSQTW VQDERELKRQ RRKESNRESA RRSRLRKQAE  300
CDELAQRADV LNGENASLRA EINKLRSQYE ELVAENNALK NRFSTVRSLE GVNLDGKEQE  360
PETSTRQDVA ETTRGSYNNS A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290296RRSRLRK
2290297RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.222280.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061310001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535050.0AK353505.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-47-I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637770.10.0PREDICTED: transcription factor HBP-1a
SwissprotQ84LG20.0BZP68_ARATH; bZIP transcription factor 68
TrEMBLA0A078FG900.0A0A078FG90_BRANA; BnaA09g24610D protein
STRINGBo5g048660.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.10.0basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]