PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061232001
Common NameGSBRNA2T00061232001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 713aa    MW: 79594.7 Da    PI: 6.0085
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061232001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-1961116156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  q+k+WFqN+R++ k
  GSBRNA2T00061232001  61 RKRYHRHTQQQIQEMENFFKECPHPDDNQRKELSRHLGLDHLQIKFWFQNKRTQNK 116
                          789999***********************************************998 PP
2START161.27.7e-512414592206
                          HHHHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
                START   2 laeeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                          la  a+ el+++a+ +ep+W+  +  ++++  e++++++ + +     +++ea+r++++v+m +++ v  l+d++  W++++a    +a+
  GSBRNA2T00061232001 241 LAVGAMSELIALAQMNEPLWKGGVhgTILDLNEYTRNLQNGLGpkqvgFRTEASRETAIVFMHHMDIVHRLMDVN-VWSTMFAgmvgRAM 329
                          67889*******************9*99**********665559999****************************.************** PP

                          EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
                START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          t++++ +g      g+++lm+ae+q+lsplv+ R+ +fvRy++q+g+g w +vd+S+d+  ++ e ++   ++++pSg+li++++n+ s+
  GSBRNA2T00061232001 330 THDTLLTGgqgnldGTIHLMTAEFQVLSPLVSsRECYFVRYCKQHGEGLWGVVDISIDHLIPNLE-PK---CRRRPSGCLIQDMPNRFSR 415
                          **************************************************************985.55...556**************** PP

                          EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          vtwvehv++++r   h++++ l++sg+a ga++wv+tl+rqce+
  GSBRNA2T00061232001 416 VTWVEHVEVDDRGElHAMFKNLLNSGQALGANRWVSTLDRQCER 459
                          ************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2043116IPR009057Homeodomain-like
SuperFamilySSF466899.19E-1851119IPR009057Homeodomain-like
PROSITE profilePS5007116.21258118IPR001356Homeobox domain
SMARTSM003891.3E-1659122IPR001356Homeobox domain
CDDcd000866.25E-1760119No hitNo description
PfamPF000461.2E-1661116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084834.478231462IPR002913START domain
SuperFamilySSF559613.52E-27233460No hitNo description
CDDcd088753.55E-98235458No hitNo description
SMARTSM002347.4E-40240459IPR002913START domain
PfamPF018523.4E-41242459IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-4342452IPR023393START-like domain
SuperFamilySSF559611.32E-14503704No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MSLPNYMEPV DDVNNNNNGD TDNNENENNN NMNGGASFGD EEFDSENQED GNTQNPRAGK  60
RKRYHRHTQQ QIQEMENFFK ECPHPDDNQR KELSRHLGLD HLQIKFWFQN KRTQNKNHQE  120
RHENLQLREE NTRLRADNHH FREALANASC PNCGGRTAVG EMSFEEHHLH LENAKLTEEI  180
RQLSEVAKYT GKAVMRYPVL PTPNQAPPFE PPMTTNGSIG NLSLSNIGSV KEADRPLVIE  240
LAVGAMSELI ALAQMNEPLW KGGVHGTILD LNEYTRNLQN GLGPKQVGFR TEASRETAIV  300
FMHHMDIVHR LMDVNVWSTM FAGMVGRAMT HDTLLTGGQG NLDGTIHLMT AEFQVLSPLV  360
SSRECYFVRY CKQHGEGLWG VVDISIDHLI PNLEPKCRRR PSGCLIQDMP NRFSRVTWVE  420
HVEVDDRGEL HAMFKNLLNS GQALGANRWV STLDRQCERL AIMMASNIPS IEPGGQITVT  480
NNAKQSLLKL VERMSRGFFD GVTTSTADIW WNLAEYTGDS VSVMTRKSLN DPGRPEGLIL  540
CAAHSFWVPV PPITVFDYLR DEKNRTNWDV LFLGGNPQKL THIFNGRDDR NCVSLLRSPN  600
TSQSEMMMIE ESSTEPAASF LVYAPVDVPS MEKVLNGGDP KCVPLLPSGF AILPDGTAQP  660
GKAGGSLVNV SFQMLVDSSP SGMLTFSSVS TIESLILAAA NKIKAYFTQQ TA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061232001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634261.10.0PREDICTED: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A078FJB90.0A0A078FJB9_BRANA; BnaC04g12430D protein
STRINGBo4g045920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]