PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00061087001
Common NameGSBRNA2T00061087001, LOC106357697, LOC106357699, LOC106406520
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 280aa    MW: 31413.8 Da    PI: 9.7875
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00061087001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind59.41.7e-181110192
            GAGA_bind   1 mdddgsre..rnkg.yye.................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaer 70 
                          m++ g+++  r k+ y++                 ++++l   +++++ms++aerda+++ern al++kk+a+a+rd+a+ qrdkal+er
  GSBRNA2T00061087001   1 MESGGQYDngRCKPdYFKgtppsvwnmmpqhqikeQHNALV--MNKKIMSILAERDAALKERNEALAAKKEALAARDEALEQRDKALSER 88 
                          88889888899999999999999999998887754446666..99********************************************* PP

            GAGA_bind  71 nkalverdnkllalllvensla 92 
                          ++a++er+ +l al + e++  
  GSBRNA2T00061087001  89 DNAIMERETALNALHYPEKNNL 110
                          ************9998877644 PP
2GAGA_bind2441e-74129279149301
            GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCttt 238
                          ++++ +++ ++++ ++k+ +k +e+ ++  ++++  ++ +++++  +++ln v++De+t+PvP+C+CtG+ rqCYkWG+GGWqS+CCttt
  GSBRNA2T00061087001 129 NPSHISTKPTKRKIETKQGNKLGEDLNRLAASPG--KKCRKDWDVNEVGLNLVAFDETTMPVPMCTCTGTARQCYKWGSGGWQSSCCTTT 216
                          3333333333333334455666777777777777..67**************************************************** PP

            GAGA_bind 239 iSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          +S++PLP+++++r++R++grKmS+++f++lL++La++G dls pvDLkd+WA+HGtn+++ti+
  GSBRNA2T00061087001 217 LSQHPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLAGQGQDLSSPVDLKDYWARHGTNRYITIK 279
                          **************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012268.9E-1361279IPR010409GAGA-binding transcriptional activator
PfamPF062171.5E-8218279IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MESGGQYDNG RCKPDYFKGT PPSVWNMMPQ HQIKEQHNAL VMNKKIMSIL AERDAALKER  60
NEALAAKKEA LAARDEALEQ RDKALSERDN AIMERETALN ALHYPEKNNL NYILSCAKRG  120
ETERSHLPNP SHISTKPTKR KIETKQGNKL GEDLNRLAAS PGKKCRKDWD VNEVGLNLVA  180
FDETTMPVPM CTCTGTARQC YKWGSGGWQS SCCTTTLSQH PLPQMPNKRH SRMGGRKMSG  240
NVFSRLLSRL AGQGQDLSSP VDLKDYWARH GTNRYITIK*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. {ECO:0000269|PubMed:14731261}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00061087001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6336031e-119EF633603.1 Cardamine pratensis GAGA-motif binding transcriptional activator (BBR/BPC5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013702660.10.0protein BASIC PENTACYSTEINE5-like
RefseqXP_022560581.10.0protein BASIC PENTACYSTEINE5-like
SwissprotF4JUI31e-160BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBLA0A078FCL60.0A0A078FCL6_BRANA; BnaC03g60260D protein
TrEMBLA0A3P6BH060.0A0A3P6BH06_BRAOL; Uncharacterized protein
STRINGBra010720.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40902659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38910.21e-144basic pentacysteine 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]