PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00061063001 | ||||||||
Common Name | GSBRNA2T00061063001, LOC106357683, LOC106389910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 34373.4 Da PI: 9.175 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.3e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l ++k +G g+W++ ++ g+ R++k+c++rw +yl GSBRNA2T00061063001 36 KGAWTKEEDARLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 83 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 58 | 2.2e-18 | 89 | 133 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSBRNA2T00061063001 89 RGNFTEDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 133 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 27 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.354 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 35 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-13 | 36 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.87E-9 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 28.821 | 84 | 138 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-27 | 87 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-17 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-16 | 89 | 133 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.72E-12 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MYVRFSYQEI IRSKHRKQKE KSMGRSPCCE KAHTNKGAWT KEEDARLTAY IKAHGEGCWR 60 SLPKAAGLLR CGKSCRLRWI NYLRPDLKRG NFTEDEDELI IKLHSLLGNK WSLIAGRLPG 120 RTDNEIKNYW NTHIRRKLIN RGIDPTTHRP VQESSSASQD SKPTQLAEAI TSNNTINISF 180 TNTPKMESTS CFQVKPEKIS MLTFKEEKDE FLIEEKLPDL NLELRISLPD VVEGKSTRER 240 CFKCSLGMIN GMECRCGSMR CDVVGGSSGS TGKGGDISHG FDFLGLATKE TTTSLLGFRS 300 LEMI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-28 | 35 | 138 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bna.5937 | 0.0 | leaf| seed |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00061063001 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KR076549 | 0.0 | KR076549.1 Brassica napus MYB transcription factor 4-1 (MYB4-1.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013652821.1 | 0.0 | transcription repressor MYB4-like | ||||
Refseq | XP_013685716.1 | 0.0 | transcription repressor MYB4-like | ||||
Swissprot | Q9SZP1 | 1e-167 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A078FGK9 | 0.0 | A0A078FGK9_BRANA; BnaC03g60080D protein | ||||
STRING | Bo3g149450.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-156 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 106357683 | 106389910 |