PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060964001 | ||||||||
Common Name | GSBRNA2T00060964001, LOC106364539, LOC106379361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40450.9 Da PI: 5.4798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.9 | 5.4e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ ++ ++R++k+c++rw +yl GSBRNA2T00060964001 14 KGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.1 | 7.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l GSBRNA2T00060964001 67 RGKFSAEEEQTILHLHSILGNK-WSAIATHLQ-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.605 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.5E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.0E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.68E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.697 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.61E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTPE EDQKLIDYIH KHGHGSWRAL PKLADLNRCG KSCRLRWTNY 60 LRPDIKRGKF SAEEEQTILH LHSILGNKWS AIATHLQGRT DNEIKNFWNT HLKKKLIQMG 120 IDPVTHQPRT DLFASLPQLI ALANLKDLIE QTSQFSSIQA EAAQLAKLQY LNGMHNSSAS 180 LSNNNNNSPS SILDIDQNHA INLLNSMVSW NKEHNSKFNP ALELEAEDQN EGLFPIGSII 240 DSTTQQLQQQ QYHLNNSPIE QPSQGDPLLD HVPFNLQTSL NSEDHFIDTL VKHPIDQDHD 300 DPSSWILPSL IDNSPKNAMS SLPYNNPTDA SSSSSYGAGE SASLYWPDFC FDESLINDIS 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060964001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519560 | 0.0 | AY519560.1 Arabidopsis thaliana MYB transcription factor (At1g34670) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013659543.1 | 0.0 | transcription factor MYB41-like | ||||
Refseq | XP_013674792.1 | 0.0 | transcription factor MYB41-like | ||||
Swissprot | Q9S9Z2 | 0.0 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A078FCF2 | 0.0 | A0A078FCF2_BRANA; BnaAnng02150D protein | ||||
STRING | Bo6g044070.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 0.0 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Entrez Gene | 106364539 | 106379361 |
Publications ? help Back to Top | |||
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