PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060603001 | ||||||||
Common Name | GSBRNA2T00060603001, LOC106443367 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 307aa MW: 34328.3 Da PI: 7.3233 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59 | 1.1e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv +++ +G+g W+t ++ g++R++k+c++rw +yl GSBRNA2T00060603001 14 KGPWTPEEDEKLVSYIQAHGPGKWRTLPKNAGLKRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.1e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg ++ +E+e +++++++lG++ W++Ia +++ gRt++++k++w+++ GSBRNA2T00060603001 67 RGEFSLQEEETIIQLHRLLGNK-WSAIAIHLP-GRTDNEIKNYWNTH 111 899*******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 7 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.024 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.25E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.84 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.58E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGKSSSSEES EVKKGPWTPE EDEKLVSYIQ AHGPGKWRTL PKNAGLKRCG KSCRLRWTNY 60 LRPDIKRGEF SLQEEETIIQ LHRLLGNKWS AIAIHLPGRT DNEIKNYWNT HIKKKLLRMG 120 IDPVTHCPRI NLLQLSSFLT SSLFKSMSQP VNIPFGLANT SINPELLNQL NTSLSNVQTE 180 SYQPHQANQQ LQNDHQTSFT GLLNSTPPVQ WQNNGECLEN YLSYTVSGGQ SINQVPLTGN 240 YSSAINDGEN YKVGWNFSSS MLPSSSTPLN SSSTSFINVG SEDDKESYGS DMLMFHHHDN 300 NALNLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-29 | 11 | 116 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060603001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626820.1 | 0.0 | PREDICTED: transcription repressor MYB4 | ||||
Refseq | XP_013740384.1 | 0.0 | transcription factor MYB102 | ||||
Swissprot | Q9LDR8 | 1e-84 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A078JIC6 | 0.0 | A0A078JIC6_BRANA; BnaC03g71860D protein | ||||
TrEMBL | A0A0D3B3J2 | 0.0 | A0A0D3B3J2_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g022210.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14465 | 17 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54230.1 | 1e-146 | myb domain protein 49 |
Link Out ? help Back to Top | |
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Entrez Gene | 106443367 |
Publications ? help Back to Top | |||
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