PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00060504001 | ||||||||
Common Name | GSBRNA2T00060504001, LOC106382765 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 852aa MW: 95522.8 Da PI: 6.5146 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1e-22 | 145 | 246 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F GSBRNA2T00060504001 145 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 232 99*****************************7333.34459************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ GSBRNA2T00060504001 233 -RGENGELRVGVRRA 246 .449999*****996 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 271 | 353 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rW +SkWrsLk GSBRNA2T00060504001 271 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDPTRWAKSKWRSLK 353 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-40 | 141 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-40 | 142 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-20 | 143 | 245 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 145 | 246 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 145 | 247 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.7E-37 | 271 | 353 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-10 | 689 | 795 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.96E-11 | 702 | 781 | No hit | No description |
PROSITE profile | PS51745 | 24.282 | 704 | 788 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MEVSVKGNHG GGGENAVSVV SGEGQKSNLN RVVDEEAAIY RELWHACAGP LVTVPRRDDR 60 VFYFPQGHIE QVEASTNQAA EQQMPLYDLP SKLLCRVINV DLKAEVDTDE VYAQITLLPE 120 PNQDENAVEK EAPPPPPPRF QVHSFCKTLT ASDTSTHGGF SVLRRHADEC LPPLDMSRQP 180 PTQELVAKDL HANEWRFRHI FRGQPRRHLL QSGWSVFVSS KRLVAGDAFI FLRGENGELR 240 VGVRRAMRQQ GIVPSSVISS HSMHLGVLAT AWHAISTGTM FTVYYKPRTS PSEFIVPFDQ 300 YMESVKNNYS IGMRFKMRFE GEEAPEQRFT GTIVGIEDSD PTRWAKSKWR SLKVRWDETS 360 SIPRPERVSP WKIEPALAPP ALSPVPMTRP KRPRYNMASS SPDSSMHIKE GSSKVNVYPL 420 PASGLSRVLQ GQEYPTLRTK HTESVECDAP ESSVVWQSSA DDDKVDVASR RYENWMSSGR 480 HEYTDLLSGF GANVDPSQGH QIPFHDHSSS PSVTAKKILS DQDAKFDYLA NQWQMMNSGL 540 SLKLHESPQI PSASDASFQG RGNATYGEYP VLHSLTTETA GGNWPIRPRA LNYFEEAVHA 600 QAREHVTERP QMVQEETAKS RDGNCRLFGI PLVNNVNETD STMSQRNNLN ENSGFTQMAS 660 PKVQDLSDHS KGSKSTNDHR EQGRPSQAKQ PHAKDSHCKT NSNRSCTKVH KQGIALGRSV 720 DLSKFQNYEE LIAELDMLFE FNGELMAPKK DWLIVYTDDE NDMMLVGDDP WQEFCCMVRK 780 IFIYTKEEVR NMNPRTLSCR SEEEAVVGEG SDAKDGKSAS NPSLSSELLN QKNQHTLQAE 840 GDVEAQIRRR V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-179 | 38 | 375 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-179 | 38 | 375 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-179 | 38 | 375 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00060504001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979459 | 0.0 | JN979459.1 Brassica rapa subsp. pekinensis auxin response factor 2-1 (ARF2-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013678280.1 | 0.0 | auxin response factor 2 isoform X1 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A078JPD8 | 0.0 | A0A078JPD8_BRANA; Auxin response factor | ||||
STRING | Bo2g161810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 106382765 |