PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00059973001

Common Name

GSBRNA2T00059973001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 300aa MW: 33120 Da PI: 7.731

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00059973001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.3	1.6e-17	57	106	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g GSBRNA2T00059973001 57 RYRGVRRRP-WGRYAAEIRDPM----SkERRWLGTFDTAEEAACAYDCAARAMRG 106 59*****.******84....35999********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	6.6E-11	57	106	IPR001471	AP2/ERF domain
CDD	cd00018	8.06E-31	57	113	No hit	No description
PROSITE profile	PS51032	21.957	57	114	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.7E-29	57	113	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.7E-21	57	114	IPR016177	DNA-binding domain
SMART	SM00380	9.6E-33	57	122	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-9	58	69	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.4E-9	80	96	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEEAIMRLEG AEHRETNNHS LKRKPSRTSS TAPSSPGGVT IAKAPPGGGT SGGTTIRYRG 60 VRRRPWGRYA AEIRDPMSKE RRWLGTFDTA EEAACAYDCA ARAMRGLKAR TNFVYPLDSY 120 HHRLLSPPPM NMFLLRDVLN SQPLSPFAYP HYNLSSVSGL LNDSFTNVND VSEDHSPKAK 180 RSSTTDNDNM ISILEPEPAG SGLLQEVVQG FLPKPISQQT STPPKTNQPY VGVFPTMLEN 240 GFQTDLGVPN HINLEGNGFN QVKYHGELTW PDHASGFDAA KMHQNGNGGM FYQYCFHDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-19	47	113	4	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First observed in the embryo at globular stage in cotyledons primordia and later confined to cotyledons tips and shoot apical meristem. Also detected in emerging leaf primordia. {ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.
Uniprot	TISSUE SPECIFICITY: Cotyledons, leaf primordia and shoot apical meristems. {ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16339853, ECO:0000269\|PubMed:17056621, ECO:0000269\|PubMed:17376809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00059973001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009109850.1	0.0	PREDICTED: ethylene-responsive transcription factor ESR2 isoform X1
Refseq	XP_013655168.2	0.0	ethylene-responsive transcription factor ESR2-like
Refseq	XP_022545918.1	0.0	ethylene-responsive transcription factor ESR2-like
Swissprot	Q9FYK5	1e-168	ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBL	A0A078HEC6	0.0	A0A078HEC6_BRANA; BnaA08g19170D protein
STRING	Bra010972.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7355	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24590.1	1e-132	DORNROSCHEN-like

Publications ? help Back to Top
Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Thoma R,Chandler JW Polarity in the early floral meristem of Arabidopsis. Plant Signal Behav, 2015. 10(4): p. e992733 [PMID:25806573] Comelli P,Glowa D,Chandler JW,Werr W Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response. J. Exp. Bot., 2016. 67(1): p. 143-55 [PMID:26428063] Seeliger I, et al. The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition. Mol. Genet. Genomics, 2016. 291(5): p. 1835-49 [PMID:27277595] Chandler JW,Werr W DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis. J. Exp. Bot., 2017. 68(13): p. 3457-3472 [PMID:28859377] Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin. Front Plant Sci, 2017. 8: p. 1841 [PMID:29123539]