PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00059936001 | ||||||||
Common Name | GSBRNA2T00059936001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | RAV | ||||||||
Protein Properties | Length: 351aa MW: 39407.6 Da PI: 9.8776 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.2e-12 | 65 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g GSBRNA2T00059936001 65 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAASYDIAARRFRG 113 689***9788.8*********3.....5*************************98 PP | |||||||
2 | B3 | 105.6 | 2.5e-33 | 182 | 284 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ tpsdv+k++rlv+pk++ae+h ++++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+ GSBRNA2T00059936001 182 FEKTVTPSDVGKLNRLVIPKQHAEKHfplpvtvTPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFE 271 99*****************************996677899************************************************** PP E-SSSEE..EEEE CS B3 84 ldgrsefelvvkv 96 +++ +++l++ + GSBRNA2T00059936001 272 RSSGPDRQLYIDW 284 9877888777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-6 | 65 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-24 | 65 | 120 | No hit | No description |
SuperFamily | SSF54171 | 4.58E-16 | 65 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.48 | 66 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-27 | 66 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-19 | 66 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-41 | 175 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.37E-33 | 180 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-29 | 181 | 273 | No hit | No description |
PROSITE profile | PS50863 | 14.522 | 182 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.6E-27 | 182 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-30 | 182 | 284 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDYSCLDDNT SNTSETLSMS KKTPSPPLPL PPAMRLYRMG SGGSSVVLDL ENGVETESSR 60 KLPSSRFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEEEA AASYDIAARR FRGRDAVTNF 120 KSPASDAESA FLEAHSKAEV VDMLRKHTYA DELRQSERKK RCEFSKTTVT NENDGVSREV 180 LFEKTVTPSD VGKLNRLVIP KQHAEKHFPL PVTVTPSPTK GVLINLEDRT GKVWRFRYSY 240 WNSSQSYVLT KGWSRFVKEK NLRAGDVVCF ERSSGPDRQL YIDWKVRSGI EKITPVQNVV 300 RLFGVNIFNA TTTNANTNDV VGESGSKKRF REVDLFALGC SKKQAIINVL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-57 | 179 | 289 | 11 | 119 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.5206 | 0.0 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00059936001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013657121.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor TEM1-like | ||||
Swissprot | Q9C6M5 | 0.0 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | A0A078HFC4 | 0.0 | A0A078HFC4_BRANA; BnaA08g19490D protein | ||||
STRING | Bra011002.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 0.0 | RAV family protein |