PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059507001
Common NameGSBRNA2T00059507001, LOC106452948
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 370aa    MW: 40469.4 Da    PI: 5.6587
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059507001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.7e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ ++e++   +C+++  +lC +C  + H+       H++
  GSBRNA2T00059507001  4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44
                         6*****************************65677777765 PP
2zf-B_box24.84.4e-084694441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...........Htvvp 41
                          +C+++++++++  C + ++ lC++C  ++H++           H++++
  GSBRNA2T00059507001 46 LVCERCNSQPATVRCVEERVSLCQNCDWSGHNNnnnnsssssnnHKRQT 94
                         68*****************************888888888888888765 PP
3CCT62.51.3e-21312355144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  GSBRNA2T00059507001 312 RNNAVMRYKEKKKARKFDKTVRYASRKARADVRRRVKGRFVKAG 355
                          99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.798147IPR000315B-box-type zinc finger
CDDcd000218.96E-8447No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.1294395IPR000315B-box-type zinc finger
CDDcd000211.20E-54776No hitNo description
SMARTSM003360.734895IPR000315B-box-type zinc finger
PfamPF062032.4E-16312354IPR010402CCT domain
PROSITE profilePS5101715.18312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNSQPATVRC  60
VEERVSLCQN CDWSGHNNNN NNSSSSSNNH KRQTISCYSG CPSSSELASI WSFCLDLAGQ  120
SGCEQEMGLM NIDDDGQNNQ NCNEEKKDVA GSSSRPETSS AAPATSSFPK DVRVCEDDFY  180
GNLGMDEVDL ALENYEELFG TAFNTSGELF GQGGIDCLFQ KHHQGAAPEG GNLVQPAESN  240
DDSFMSSKTE PIICFTSKPA HSNISFSGVT GDSSAGDFQE CGASSSMQLS GEPPWYPQTS  300
QDNNASSHSV TRNNAVMRYK EKKKARKFDK TVRYASRKAR ADVRRRVKGR FVKAGEAYDY  360
DPLTPTRSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.81300.0flower| leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059507001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750599.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_013750600.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A078HDR00.0A0A078HDR0_BRANA; BnaA05g29980D protein
TrEMBLA0A397ZMF60.0A0A397ZMF6_BRACM; Uncharacterized protein
STRINGBra029666.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.40.0CONSTANS-like 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]