PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00059332001 | ||||||||
Common Name | GSBRNA2T00059332001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17590.4 Da PI: 9.1766 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien nr vtfskRrng+ KKA+E+ vLCda+va+i+f+s+gk+ +y+ GSBRNA2T00059332001 9 KRIENVNNRVVTFSKRRNGLVKKAKEITVLCDAKVALIVFASNGKMTDYC 58 79*********************************************997 PP | |||||||
2 | K-box | 72.2 | 1.6e-24 | 71 | 139 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 yqk sgk+l++ak+e+l++e++k+kke+++Lq e+Rhl+Ged++sL+lk+L+ +e+++e++l k+R+++ GSBRNA2T00059332001 71 YQKLSGKKLWDAKHENLSNEIDKIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAVEHGLDKVRDHQ 139 899***************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.151 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.67E-37 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 7.46E-34 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-22 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.4E-15 | 82 | 139 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.236 | 84 | 154 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGRGKIEIKR IENVNNRVVT FSKRRNGLVK KAKEITVLCD AKVALIVFAS NGKMTDYCCP 60 SMDLGAMLDQ YQKLSGKKLW DAKHENLSNE IDKIKKENDS LQLELRHLKG EDIQSLNLKN 120 LMAVEHAVEH GLDKVRDHQA YGVPYDKKEK CDHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-17 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 9e-17 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 9e-17 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 9e-17 | 1 | 91 | 1 | 83 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.25098 | 1e-165 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the genetic control of flower development. Is required for normal development of petals and stamens in the wild-type flower. Forms a heterodimer with APETALA3 that is required for autoregulation of both AP3 and PI genes. AP3/PI heterodimer interacts with APETALA1 or SEPALLATA3 to form a ternary complex that could be responsible for the regulation of the genes involved in the flower development. AP3/PI heterodimer activates the expression of NAP. AP3/PI prevents GATA22/GNL and GATA21/GNC expression (PubMed:18417639). {ECO:0000269|PubMed:18417639, ECO:0000269|PubMed:8565821, ECO:0000269|PubMed:9489703}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00059332001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated by the meristem identity proteins APETALA1 and LEAFY with the cooperation of UFO. Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:11283333, ECO:0000269|PubMed:19783648}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC967963 | 0.0 | KC967963.1 Brassica oleracea var. viridis PI.c (PI.c) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013736392.1 | 1e-97 | floral homeotic protein PISTILLATA-like isoform X2 | ||||
Refseq | XP_013736393.1 | 1e-97 | floral homeotic protein PISTILLATA-like isoform X1 | ||||
Refseq | XP_022549119.1 | 9e-98 | floral homeotic protein PISTILLATA isoform X3 | ||||
Swissprot | P48007 | 2e-96 | PIST_ARATH; Floral homeotic protein PISTILLATA | ||||
TrEMBL | A0A078HG71 | 1e-109 | A0A078HG71_BRANA; BnaC09g37550D protein | ||||
STRING | Bo9g152080.1 | 1e-101 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5300 | 27 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 8e-99 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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