PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00059242001 | ||||||||
Common Name | GSBRNA2T00059242001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 206aa MW: 23814.4 Da PI: 8.2287 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.4e-16 | 18 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++ GSBRNA2T00059242001 18 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 62 7888******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-19 | 16 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.63E-13 | 16 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.379 | 16 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 18 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.19E-10 | 22 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MFCQTIPSAL FNILWLKRGQ ITPQEEGIIL ELHSLWGNKW STIARYLPGR TDNEIKNYWR 60 THYKKKDKSF SKQDKYKRSR KQLGMQPQPQ NQRSQMVSQN HMNHDNEQNI ASSFSYPTSV 120 IHDQFHMPQS VTATSSDHSM IDEGNLWGSL WSLNDEDRPH RFGGGWEQRT AADISEKFNG 180 DRIEAPPCGS GEYNYNGFYT GGYIF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00059242001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371980 | 4e-63 | AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds. | |||
GenBank | AY519593 | 4e-63 | AY519593.1 Arabidopsis thaliana MYB transcription factor (At3g30210) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022562449.1 | 1e-141 | myb-related protein MYBAS2-like | ||||
TrEMBL | A0A078HD76 | 1e-154 | A0A078HD76_BRANA; BnaC02g38120D protein | ||||
STRING | Bra020744.1-P | 1e-123 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 1e-89 | myb domain protein 121 |
Publications ? help Back to Top | |||
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