PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00059163001
Common NameGSBRNA2T00059163001, LOC106379609
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 186aa    MW: 20493.2 Da    PI: 10.101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00059163001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-191160255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  GSBRNA2T00059163001 11 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 60
                         6********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-131160IPR001471AP2/ERF domain
CDDcd000185.47E-291168No hitNo description
Gene3DG3DSA:3.30.730.104.5E-311168IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-221169IPR016177DNA-binding domain
SMARTSM003805.6E-351174IPR001471AP2/ERF domain
PROSITE profilePS5103222.4051168IPR001471AP2/ERF domain
PRINTSPR003675.5E-111223IPR001471AP2/ERF domain
PRINTSPR003675.5E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVSTTCAREV HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT FDTPEEAALA YDGAARFLRG  60
IKAKTNFPPP LSLNLNHIPS APSATAAAAD NHHNQHHWFP APPPPPLSIS DNHHHHHRIF  120
LRTGVLSDKA SDFPTTAPLY FAASPDVATS ASRVFEFPIM SPSPSSATAR RGLAIDLNEP  180
PPLWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20768163ATERF1
3gcc_A1e-20768163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00059163001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013674978.11e-132ethylene-responsive transcription factor 12
SwissprotQ94ID63e-89ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A078HE691e-131A0A078HE69_BRANA; BnaC03g58550D protein
TrEMBLA0A3P6BFM61e-131A0A3P6BFM6_BRAOL; Uncharacterized protein
STRINGBo3g143340.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-90ERF domain protein 12
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]