PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058728001
Common NameGSBRNA2T00058728001, LOC106378399
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 276aa    MW: 30837.7 Da    PI: 8.7378
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058728001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-19129183256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  GSBRNA2T00058728001 129 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 183
                          677889***********************************************98 PP
2HD-ZIP_I/II122.91.6e-39129218191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rLeke +eLr +
  GSBRNA2T00058728001 129 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLEKEAAELR-A 217
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00058728001 218 L 218
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.7E-28297IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.602.7E-18110183IPR009057Homeodomain-like
SuperFamilySSF466891.13E-18115186IPR009057Homeodomain-like
PROSITE profilePS5007117.135125185IPR001356Homeobox domain
SMARTSM003891.9E-17127189IPR001356Homeobox domain
PfamPF000461.4E-16129183IPR001356Homeobox domain
CDDcd000863.69E-16129186No hitNo description
PRINTSPR000317.2E-6156165IPR000047Helix-turn-helix motif
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PRINTSPR000317.2E-6165181IPR000047Helix-turn-helix motif
PfamPF021837.8E-8185219IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-23185228IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010582Biological Processfloral meristem determinacy
GO:0048467Biological Processgynoecium development
GO:0080127Biological Processfruit septum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMMGKDDLGL SLSLGFAQNQ HPLQLNLKPT SSPMSNHQMF PWNQTFVSSS DHQNHQSLRK  60
IDVNSLPSTV ELEEETGVSS PNSTISSTVS GKRRSERQGS GDDLDIALDR SSSRGTSDEE  120
EEYGGEACRK KLRLSKDQSA VLEDTFKEHN TLNPKQKLAL AKKLGLTARQ VEVWFQNRRA  180
RTKLKQTEVD CEYLKRCVEK LTEENRRLEK EAAELRALKL SPGLYGKMSP PTTLLMCPSC  240
ERVGGPSNHS QRSVSLNPWL QMAHGSTFDV KHPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177185RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00050PBMTransfer from AT4G17460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058728001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412521e-158AJ441252.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT1.
GenBankAK2285871e-158AK228587.1 Arabidopsis thaliana mRNA for homeobox-leucine zipper protein HAT1, complete cds, clone: RAFL15-36-J21.
GenBankATU093321e-158U09332.1 Arabidopsis thaliana clone HAT1 homeobox protein mRNA, complete cds.
GenBankAY0873221e-158AY087322.1 Arabidopsis thaliana clone 34167 mRNA, complete sequence.
GenBankBT0057561e-158BT005756.1 Arabidopsis thaliana clone RAFL15-36-J21 (R50164) putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
GenBankBT0061121e-158BT006112.1 Arabidopsis thaliana clone U50164 putative homeobox-leucine zipper protein HAT1 (HD-Zip protein 1) (At4g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144501.10.0PREDICTED: homeobox-leucine zipper protein HAT1
RefseqXP_013673989.10.0homeobox-leucine zipper protein HAT1
SwissprotP466000.0HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A078JMR30.0A0A078JMR3_BRANA; BnaAnng23540D protein
TrEMBLA0A398AQ900.0A0A398AQ90_BRACM; Uncharacterized protein
STRINGBra026255.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-149Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]