PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058672001
Common NameGSBRNA2T00058672001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 311aa    MW: 34249.8 Da    PI: 9.2517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058672001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.45.7e-12555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+  l ++v ++G+g W+tI +          R+  ++k++w++
  GSBRNA2T00058672001  5 KQKWTQEEESALRCGVIKHGPGKWRTILKDPDfsevlFLRSNVDLKDKWRN 55
                         79**********************************955**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.465158IPR017930Myb domain
SuperFamilySSF466897.02E-15271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-12456IPR009057Homeodomain-like
SMARTSM007173.2E-6459IPR001005SANT/Myb domain
PfamPF002495.0E-9555IPR001005SANT/Myb domain
CDDcd116603.06E-17656No hitNo description
SMARTSM005263.6E-13106171IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.1E-12107177IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-14107185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150421.939108176IPR005818Linker histone H1/H5, domain H15
PfamPF005389.2E-6113169IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGAPKQKWTQ EEESALRCGV IKHGPGKWRT ILKDPDFSEV LFLRSNVDLK DKWRNMSVIA  60
NGWGSREKSR LAVKRTHSLP KQEATSLAYT SPLQSDEEMA DATGTSAPNV RLDSLIMEAI  120
STIKEPGGSN KTSIGTYIEE QYHAPPDFKR LLSAKLKYLT ACRKLIKVKR KYRIPNSTPL  180
SSHRKRQLGT SSGKQRSLSS PSPKTDGDEV SVETNAQIDP ELARMKTMNV HEAAAVAAQA  240
VAEAEAAMAA AEEAARDAEL AEAEAEVAQA FAEEALKTLK GRYNNCKVVK HTHTHTQIQV  300
HEIIDKENAY *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.25220.0flower| seed
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058672001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0627362e-84AY062736.1 Arabidopsis thaliana Unknown protein (At1g49950; F2J10.16) mRNA, complete cds.
GenBankAY5195392e-84AY519539.1 Arabidopsis thaliana MYB transcription factor (At1g49950) mRNA, complete cds.
GenBankBT0096772e-84BT009677.1 Arabidopsis thaliana At1g49950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661791.10.0telomere repeat-binding factor 1-like
RefseqXP_013661792.10.0telomere repeat-binding factor 1-like
RefseqXP_013661793.10.0telomere repeat-binding factor 1-like
RefseqXP_013749101.10.0telomere repeat-binding factor 1-like
RefseqXP_013749102.10.0telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-135TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A078JKS10.0A0A078JKS1_BRANA; BnaA05g36000D protein
STRINGBra039650.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-134telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  5. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  6. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]