PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058553001
Common NameGSBRNA2T00058553001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 161aa    MW: 17835.5 Da    PI: 4.3728
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058553001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64e-1032642656
                  AP2 26 g..krkrfslgkfgtaeeAakaaiaarkklege 56
                         g  ++  ++lg+f+tae+Aa+a+++a+ +++g+
  GSBRNA2T00058553001 32 GlaRHDAIWLGTFDTAEDAARAYDRAAFSMRGH 64
                         36444889***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.6E-131273IPR016177DNA-binding domain
PROSITE profilePS5103214.8681271IPR001471AP2/ERF domain
SMARTSM003801.3E-151277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-171373IPR001471AP2/ERF domain
PfamPF008472.9E-63464IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEHKVSNTNE VKYRGVTCKE ASVGKICGGD TGLARHDAIW LGTFDTAEDA ARAYDRAAFS  60
MRGHKAILNF PHEYPMMTDD PSGASENVVA SSSSQFSGTD GGNMKEVIEF DYLDDSLLEE  120
LLECGENYNQ EEWRIRMTQT IYYSFSNVGG TSTNHDFVYN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201211714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058553001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551759.11e-118ethylene-responsive transcription factor ERF095-like
SwissprotQ9LTC54e-26ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A078HAU61e-117A0A078HAU6_BRANA; BnaA01g23970D protein
STRINGBo7g040820.13e-52(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-21ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]