PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00058501001
Common NameGSBRNA2T00058501001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 221aa    MW: 25601.6 Da    PI: 5.0912
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00058501001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-2056109457
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          ++++t+eq + Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00058501001  56 KRKLTDEQMNMLEMSFCDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKN 109
                          5689************************************************95 PP
2HD-ZIP_I/II122.42.2e-3955144291
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkr+l++eq+++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++d+++ +++rLe+ev +L+e+l
  GSBRNA2T00058501001  55 KKRKLTDEQMNMLEMSFCDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKNKRLEDEYNQLKSSHDNVVVDKCRLESEVLQLKEQL 144
                          9**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.9E-1953114IPR001356Homeobox domain
PROSITE profilePS5007116.50355110IPR001356Homeobox domain
SuperFamilySSF466891.92E-1855120IPR009057Homeodomain-like
CDDcd000864.89E-1755111No hitNo description
PfamPF000464.0E-1756109IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-2057117IPR009057Homeodomain-like
PRINTSPR000316.1E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000316.1E-690106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNPTASDHNM AFISQLYPDV YTHIVPQGEV KPPKRRRKKS KRAVAAGDGS NCLFKKRKLT  60
DEQMNMLEMS FCDEHKLESE RKDKLAAELG LDPRQVAVWF QNRRARWKNK RLEDEYNQLK  120
SSHDNVVVDK CRLESEVLQL KEQLFDAERE IQRLAERVEG GSSNSPVSSS VSVEHNETSF  180
FGDYKVEEDG DDYDNMVYPV PENSYIDGEE WMNYQLNVIF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13341KRRRKKSKR
23657RKKSKRAVAAGDGSNCLFKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.79350.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00058501001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-177AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627348.11e-164PREDICTED: homeobox-leucine zipper protein ATHB-40-like
RefseqXP_022554026.11e-164homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-122ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A078HCH11e-164A0A078HCH1_BRANA; BnaC03g61830D protein
STRINGBo3g153930.11e-164(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-114homeobox protein 40
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]