PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00058348001 | ||||||||
Common Name | GSBRNA2T00058348001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARR-B | ||||||||
Protein Properties | Length: 582aa MW: 63952.6 Da PI: 6.5103 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.6 | 2.4e-27 | 191 | 244 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++Wt eLH++Fv av+qL G ekA Pk+il+lm+v+ Lt+e+v+SHLQk+Rl GSBRNA2T00058348001 191 KPRVVWTVELHKKFVAAVNQL-GFEKAMPKKILDLMNVEKLTRENVASHLQKFRL 244 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 84.4 | 3.3e-28 | 20 | 128 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl vdD+++ +++l+++l + +y +v+++ ++++alell+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++++++ + GSBRNA2T00058348001 20 VLAVDDDQTCLRILESLLHRCQY-HVTTTNQAQKALELLRENKnkFDLVISDVDMPDMDGFKLLELVGL-EMDLPVIMLSAHSDPKYVMK 107 799********************.***************888888*******************87754.558***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +eel + GSBRNA2T00058348001 108 GVTHGACDYLLKPVRIEELKN 128 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.4E-174 | 1 | 581 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.27E-35 | 17 | 138 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 3.0E-43 | 17 | 165 | No hit | No description |
SMART | SM00448 | 4.6E-33 | 18 | 130 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.285 | 19 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.0E-25 | 20 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 4.39E-28 | 21 | 133 | No hit | No description |
PROSITE profile | PS51294 | 11.056 | 188 | 247 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 188 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.69E-19 | 189 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 191 | 244 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-7 | 193 | 242 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MTVEQQDCVA LDQFPVGMRV LAVDDDQTCL RILESLLHRC QYHVTTTNQA QKALELLREN 60 KNKFDLVISD VDMPDMDGFK LLELVGLEMD LPVIMLSAHS DPKYVMKGVT HGACDYLLKP 120 VRIEELKNIW QHVVRKNRGS NNGDKKDGSG NEGVANSDQN NGRANRKRKD QYNEDEDEER 180 DDNDDPSSQK KPRVVWTVEL HKKFVAAVNQ LGFEKAMPKK ILDLMNVEKL TRENVASHLQ 240 KFRLYLKRIS GNQQAIMANS DLHFLQMSNG LDGFHHRPIP VGTGQFHGGA AAAGMRPFPP 300 NGILGRLNTP SGMSGVRNLS SSPSSGMFLQ NPTDLGKFHH VSSLPLNHID GGNILQGLPM 360 PLEFDQLQTN NNKSIIAGNS MAFPSFPTQQ QSSLPNNNNH LVLEGHPQAP PSAFPGHQIN 420 KRLEHWSNAV SSSSSTLPPP GQNSNSLISH QFDASSSSYS IPFCDSTIPL NPALDHTNPR 480 AFYRATDMDS SANVQPGVYY DSLQMRKSGN YGPTTDAMLS SNNPKEGFTV GQQKLQSGFM 540 GGEAGSLDDI VNSTMKQEQS QGDLSEGDLG YGGFSSLRTC I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-27 | 187 | 250 | 1 | 64 | ARR10-B |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00058348001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009140627.1 | 0.0 | PREDICTED: two-component response regulator ARR12 isoform X1 | ||||
Swissprot | P62598 | 0.0 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | A0A078HC85 | 0.0 | A0A078HC85_BRANA; Two-component response regulator | ||||
TrEMBL | A0A3P6CIE1 | 0.0 | A0A3P6CIE1_BRACM; Two-component response regulator | ||||
STRING | Bra032035.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1981 | 28 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 0.0 | response regulator 12 |