PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057936001
Common NameGSBRNA2T00057936001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 331aa    MW: 37385.1 Da    PI: 6.4144
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057936001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-1549106355
                  AP2   3 ykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV++++++gr++A+++d  s+n    k+ ++++lg ++ ++ Aa+a++ a++k++g
  GSBRNA2T00057936001  49 YRGVTRHRWTGRYEAHLWDkNSWNEtqsKKgRQVYLGAYDEEDAAARAYDLAALKYWG 106
                          9******************888877877557**********99*************98 PP
2AP250.64.7e-16149200155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  GSBRNA2T00057936001 149 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDVAAIEYRG 200
                          89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1747115IPR016177DNA-binding domain
PROSITE profilePS5103220.70548114IPR001471AP2/ERF domain
SMARTSM003806.3E-2648120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-1648114IPR001471AP2/ERF domain
PfamPF008476.6E-1249106IPR001471AP2/ERF domain
PRINTSPR003674.9E-64960IPR001471AP2/ERF domain
PfamPF008471.5E-11149200IPR001471AP2/ERF domain
CDDcd000182.78E-24149210No hitNo description
SuperFamilySSF541711.63E-17149209IPR016177DNA-binding domain
SMARTSM003802.1E-25150214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-17150208IPR001471AP2/ERF domain
PROSITE profilePS5103217.965150208IPR001471AP2/ERF domain
PRINTSPR003674.9E-6190210IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKEISRRNKK TSVEDKTTDE SSASSVVVKT KRKRQSQPRD APPQRSSMYR GVTRHRWTGR  60
YEAHLWDKNS WNETQSKKGR QVYLGAYDEE DAAARAYDLA ALKYWGRDTV LNFPLCNYEE  120
DLKEMDSQSK EEYIGSLRRK SSGFSRGVSK YRGVAKHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAAIA YDVAAIEYRG LNAVTNFDIN RYLKLPAPES PIDAANIPHS DPSPFINPDH  240
ESAPSQSQSS SDENDDRKTK FLKSSPCSNA EEVVGPSTPP EIAPSRRSFP DDIQTYFGCQ  300
DSGKVEDDDV IFGGLDSFLT PDFYSELNDC *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057936001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013641679.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A078HBH10.0A0A078HBH1_BRANA; BnaA06g10760D protein
STRINGBra026082.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]