PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00057837001
Common NameGSBRNA2T00057837001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 166aa    MW: 19520.9 Da    PI: 4.8092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00057837001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-20457457
                         -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         ++++t+eq++ Le  Fe+++++   ++e++A +lgL+ rqV vWFqNrRa++k+
  GSBRNA2T00057837001  4 KRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKN 57
                         4589************************************************95 PP
2HD-ZIP_I/II122.71.8e-39394293
          HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                         +kr+l++eqv++LE sFe+e+kLe+ rK+++a eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++  +++Le++v +L+e+l+e
  GSBRNA2T00057837001  3 RKRKLTDEQVTMLEYSFENEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKSQHDSVVLGQCQLESQVLKLTEQLSE 94
                         8****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.9E-18162IPR001356Homeobox domain
PROSITE profilePS5007116.746158IPR001356Homeobox domain
CDDcd000862.06E-14359No hitNo description
SuperFamilySSF466899.19E-18465IPR009057Homeodomain-like
PfamPF000462.0E-17457IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-20565IPR009057Homeodomain-like
PRINTSPR000311.4E-52938IPR000047Helix-turn-helix motif
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PRINTSPR000311.4E-53854IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MFRKRKLTDE QVTMLEYSFE NEHKLESGRK EKIAGELGLD PRQVAVWFQN RRARWKNKKL  60
EEEYAKLKSQ HDSVVLGQCQ LESQVLKLTE QLSEAQNEIR KLSERLVVQE TSTSSSSFSV  120
EANDAPTDFE FSPMDTINYN IPLYMLDNNY YLQNMEYWDG LYVQF*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem, late flowers and siliques. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a regulatory role in auxin/cytokinin signaling during root development. {ECO:0000269|PubMed:15567172}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00057837001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), by salt stress, by indole-3-acetic acid (IAA) and during darkness conditions. Down-regulated by cytokinin. {ECO:0000269|PubMed:15567172, ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892581e-127AC189258.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021J09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013621022.11e-120PREDICTED: homeobox-leucine zipper protein ATHB-53-like
SwissprotQ9LVR02e-91ATB53_ARATH; Homeobox-leucine zipper protein ATHB-53
TrEMBLA0A078JHB81e-119A0A078JHB8_BRANA; BnaCnng53110D protein
TrEMBLA0A0D3AYU41e-119A0A0D3AYU4_BRAOL; Uncharacterized protein
STRINGBo2g167730.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126021731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.12e-91homeobox 53
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]